AT4G11960.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : PGR5-like B | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PGR5-like B (PGRL1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-LIKE A (TAIR:AT4G22890.2); Has 111 Blast hits to 111 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:7175340..7177709 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34911.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||
| Length | 313 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFTLTIPRF SAISRKPITC SSSRTQCPAP FTHGRSISLR RRLTLLPLKA STDQSGQVGG EEVDSKILPY CSINKNEKRT IGEMEQEFLQ AMQSFYYEGK 101: AIMSNEEFDN LKEELMWEGS SVVMLSSDEQ RFLEASMAYV SGNPILSDEE YDKLKMKLKM DGSEIVCEGP RCSLRSKKVY SDLAIDYFKM FLLNVPATVV 201: ALGLFFFLDD ITGFEITYLL ELPEPFSFIF TWFAAVPAIV YLALSLTKLI LKDFLILKGP CPNCGTENVS FFGTILSIPN DSNTNNVKCS GCGTEMVYDS 301: GSRLITLPEG GKA |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)