suba logo
AT2G45890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At2g45890-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RHO guanyl-nucleotide exchange factor 4
Curator
Summary (TAIR10)
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational
Description (TAIR10)
RHO guanyl-nucleotide exchange factor 4 (ROPGEF4); FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, root hair, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2); Has 301 Blast hits to 299 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:4533DIP:DIP-59395NeggNOG:ENOG410JS5DeggNOG:ENOG4111944
EMBL:AC004665EMBL:AK229390EMBL:CP002685EnsemblPlants:AT2G45890
EnsemblPlants:AT2G45890.1entrez:819197GeneID:819197Genevisible:Q0WNP7
GO:GO:0005089GO:GO:0005737GO:GO:0005886GO:GO:0009531
GO:GO:0009664GO:GO:0043547GO:GO:0048767Gramene:AT2G45890.1
hmmpanther:PTHR33101hmmpanther:PTHR33101:SF9HOGENOM:HOG000238290InParanoid:Q0WNP7
IntAct:Q0WNP7InterPro:IPR005512KEGG:ath:AT2G45890MINT:MINT-8342698
ncoils:CoilOMA:AMEINSGPaxDb:Q0WNP7Pfam:PF03759
Pfam:Q0WNP7Pfscan:PS51334PhylomeDB:Q0WNP7PIR:T02458
PRIDE:Q0WNP7PRO:PR:Q0WNP7PROSITE:PS51334ProteinModelPortal:Q0WNP7
Proteomes:UP000006548RefSeq:NP_182113.2SMR:Q0WNP7STRING:3702.AT2G45890.1
TAIR:AT2G45890tair10-symbols:ATROPGEF4tair10-symbols:RHS11tair10-symbols:ROPGEF4
UniGene:At.36575UniProt:Q0WNP7
Coordinates (TAIR10) chr2:+:18883540..18885440
Molecular Weight (calculated) 52038.00 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.54
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSSNSDQN EGTPTSSVSS PYRRTYSDIS GLSHRFDVQS FYNRPSNTNA VVLSGHEEDV SEDAEEPKDD VVNDVHGDGD EEDSDIDSAE DAELEMMRER
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)