AT2G39690.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.986 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT3G12540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:16541165..16543267 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56742.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||
| Length | 498 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHLKERLEEE EAVTRTLRVA FDGSIVSLPS LSSLFLPPQF SELIQELAIV EAEILCLDRK IEELKLKLYS EQRQTQEIQL QMTEQKRTLA RQSHVRQSTL 101: PLRHDLHQRS LSHCYQRSTL DTASTTHSRL SFSYAPDFLD ATSSGGFTDE FDGVTRMQMG RVRKGLRLVE AKTKDDPNEV SEQLINCLIG IYLELNHVSS 201: KTKGDVSLSR RPSSCSRKSN TYSYYQNAMN LDPYHVLPDS SGGVTRDIGP YKNFIHISRS SIDVTHFTHY CSPAVPRLSV LMEKLSEVDL SFLTYKQKLA 301: FWINIYNACI MHAFLEYGLP SSHNRLLTLM NKASLNVGGI VLNALAIEHF VLRHPCEPED DSLDEKETLL RHTYGLGYSE PNVTFALCRG SWSSPALRVY 401: TADEVVNDLG RARVEYLEAS VGVSSKKKIV VPQLLQWHMK DFADDIESLL EWIYSQLPRS GNLKGMIMEC LKRKAKVPLA KIVEIQTYGH EFRYLLSL |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)