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AT5G18430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: Li-tolerant lipase 1 (TAIR:AT3G04290.1); Has 3282 Blast hits to 3244 proteins in 154 species: Archae - 0; Bacteria - 202; Metazoa - 0; Fungi - 2; Plants - 3065; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2526-MONOMEREC:3.1.1.-eggNOG:ENOG410JVYTeggNOG:ENOG41105FE
EMBL:AC051626EMBL:BT020307EMBL:BT020574EMBL:CP002688
EnsemblPlants:AT5G18430EnsemblPlants:AT5G18430.1entrez:831961Gene3D:3.40.50.1110
GeneID:831961Genevisible:Q5PNZ0GO:GO:0005576GO:GO:0016042
GO:GO:0016788Gramene:AT5G18430.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF164
HOGENOM:HOG000237649InParanoid:Q5PNZ0InterPro:IPR001087InterPro:IPR013830
KEGG:ath:AT5G18430OMA:KANRMIVPaxDb:Q5PNZ0Pfam:PF00657
Pfam:Q5PNZ0PhylomeDB:Q5PNZ0PRIDE:Q5PNZ0PRO:PR:Q5PNZ0
ProteinModelPortal:Q5PNZ0Proteomes:UP000006548RefSeq:NP_197344.2SUPFAM:SSF52266
TAIR:AT5G18430TMHMM:TMhelixUniGene:At.31425UniProt:Q5PNZ0
Coordinates (TAIR10) chr5:-:6110363..6111934
Molecular Weight (calculated) 40125.60 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.00
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MTISTVIAFM SMFLVFVMSG PIVVEGRAFF VFGDSLVDSG NNNYLVTTAR ADSPPYGIDF PTRRPTGRFS NGLNIPDLIS EAIGNEEPPL PYLSPELRGR
101: SLLNGANFAS AGIGILNDTG FQFINIIRMY QQLDYFQQYQ QRVSRLIGKP QTQRLVSQAL VLITVGGNDF VNNYFLFPYS ARSRQFTLPD YVRLLISEYK
201: KILLRLNSLG VGRVLVTGAG PLGCAPAELA RSGTSNGRCS AELQRAASLY DPQLLQMINE LNKKIGRNVF IAANTNQMQE DFLSTPRRYG FVTSKVACCG
301: QGPYNGMGLC TVLSNLCPNR ELYVFWDAFH PTEKANRMIV RHILTGTTKY MNPMNLSSAL AL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)