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AT1G04800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 109132 Blast hits to 26905 proteins in 1855 species: Archae - 173; Bacteria - 37969; Metazoa - 32319; Fungi - 6881; Plants - 10265; Viruses - 1569; Other Eukaryotes - 19956 (source: NCBI BLink).
Protein Annotations
EMBL:AC004809EMBL:BT011211EMBL:CP002684EnsemblPlants:AT1G04800
EnsemblPlants:AT1G04800.1entrez:839406GeneID:839406Gramene:AT1G04800.1
KEGG:ath:AT1G04800OMA:FGQATGYPIR:B86181Proteomes:UP000006548
RefSeq:NP_171972.1STRING:3702.AT1G04800.1TAIR:AT1G04800UniGene:At.42430
UniProt:Q9MAS9
Coordinates (TAIR10) chr1:-:1348635..1349237
Molecular Weight (calculated) 18046.40 Da
IEP (calculated) 7.91
GRAVY (calculated) 0.01
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLIAGKVRV FVLVFALVTD FTMGEAEFGD EKPLFPHPHP HPLLHKKGFK KEFGDLGGGG GISGGGGFGA GGGWIGGSVG GFGGGIGGGF GGGGFGGGAG
101: KGVDGGFGKG VDGGAGKGVD GGAGKGFDGG VGKGVDGGAG KGFDGGVGKG FEGGIGKGIE GGVGKGFDGG AGKGVDGGAI GGIGGGAGKE IGGGIGGGGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)