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AT3G62820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT2G47670.1); Has 816 Blast hits to 809 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 816; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:825457eggNOG:ENOG410IW14eggNOG:ENOG410YR6WEMBL:AK175673
EMBL:AL162651EMBL:AY086305EMBL:CP002686EnsemblPlants:AT3G62820
EnsemblPlants:AT3G62820.1entrez:825457Gene3D:1.20.140.40GeneID:825457
GO:GO:0004857Gramene:AT3G62820.1hmmpanther:PTHR31080hmmpanther:PTHR31080:SF16
HOGENOM:HOG000240597InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT3G62820OMA:CSVTRYQPfam:PF04043PhylomeDB:Q9LZI3
PIR:T48071Proteomes:UP000006548RefSeq:NP_191841.1SMART:SM00856
SUPFAM:SSF101148TAIR:AT3G62820TIGRfam:TIGR01614TIGRFAMs:TIGR01614
UniGene:At.28049unipathway:UPA00545UniProt:Q9LZI3
Coordinates (TAIR10) chr3:+:23229782..23230366
Molecular Weight (calculated) 21459.90 Da
IEP (calculated) 10.55
GRAVY (calculated) -0.15
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTPMSSSIT FALVFFLLSL NPTSSLPSKR ESYVQNACSV TRYQDLCAKT LLPFASVAKN SPSKWARAGV SVAITDNKDV LRHLLKTRLS TIGKRDRIAL
101: SDCRELLQDS LDSLHKSLAV LRTLRASEFQ QQMSDLATWL SSSLTDKDTC LDGFEKTSTR SSSTVRMIRK RVTTSMYLSS NSLALLNKLA ANGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)