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AT3G55500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A16
Curator
Summary (TAIR10)
expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational
Description (TAIR10)
expansin A16 (EXPA16); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2167 Blast hits to 2164 proteins in 159 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 38; Plants - 2087; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKDMeggNOG:ENOG410YEM2EMBL:AK175875EMBL:AL132975
EMBL:CP002686EnsemblPlants:AT3G55500EnsemblPlants:AT3G55500.1entrez:824715
Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:824715Genevisible:Q9M2S9
GO:GO:0005576GO:GO:0005618GO:GO:0006949GO:GO:0009664
GO:GO:0016020Gramene:AT3G55500.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF5
HOGENOM:HOG000220793InParanoid:Q9M2S9InterPro:IPR002963InterPro:IPR007112
InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT3G55500
OMA:SETELHYPaxDb:Q9M2S9Pfam:PF01357Pfam:PF03330
Pfam:Q9M2S9Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q9M2S9
PIR:T47689PRIDE:Q9M2S9PRINTS:PR01225PRINTS:PR01226
PRO:PR:Q9M2S9PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q9M2S9
Proteomes:UP000006548RefSeq:NP_191109.1SMART:SM00837SMR:Q9M2S9
STRING:3702.AT3G55500.1SUPFAM:SSF49590SUPFAM:SSF50685TAIR:AT3G55500
tair10-symbols:ATEXP16tair10-symbols:ATEXPA16tair10-symbols:ATHEXP ALPHA 1.7tair10-symbols:EXP16
tair10-symbols:EXPA16UniGene:At.35021UniProt:Q9M2S9
Coordinates (TAIR10) chr3:-:20575073..20576102
Molecular Weight (calculated) 28163.40 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.07
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MAINPLILLT IFPLFLLLSF TDAGIPRVFS GGSWQTAHAT FYGGNDASGT MGGACGYGNL YSQGYGTNTA ALSTSLFNSG QSCGACFEIK CVNDPKWCHP
101: GNPSVFVTAT NFCPPNLAQP SDNGGWCNPP RSHFDLAMPV FLKIAEYRAG IVPISYRRVA CRKSGGIRFT INGHRYFNLV LITNVAGAGD IARTSVKGSK
201: TGWMSLTRNW GQNWQSNAVL VGQSLSFRVT SSDRRTSTSW NIAPSNWQFG QTFVGKNFRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)