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AT5G62850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nodulin MtN3 family protein
Curator
Summary (TAIR10)
Encodes a protein that is expressed in vegetative cells of pollen.
Computational
Description (TAIR10)
VEGETATIVE CELL EXPRESSED1 (AtVEX1); INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G28007.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21649eggNOG:ENOG4111M4ReggNOG:KOG1623EMBL:AB009053
EMBL:AV533590EMBL:CP002688EMBL:DQ447106EMBL:DQ653391
EnsemblPlants:AT5G62850EnsemblPlants:AT5G62850.1entrez:836406GeneID:836406
Genevisible:Q9FM10GO:GO:0005887GO:GO:0008643GO:GO:0016021
GO:GO:0034219GO:GO:0051119GO:GO:0051260Gramene:AT5G62850.1
hmmpanther:PTHR10791hmmpanther:PTHR10791:SF42HOGENOM:HOG000237944InParanoid:Q9FM10
InterPro:IPR004316KEGG:ath:AT5G62850KO:K15382OMA:PHTARTI
PaxDb:Q9FM10Pfam:PF03083Pfam:Q9FM10PhylomeDB:Q9FM10
PRO:PR:Q9FM10ProteinModelPortal:Q9FM10Proteomes:UP000006548RefSeq:NP_201091.2
STRING:3702.AT5G62850.1TAIR:AT5G62850tair10-symbols:AtSWEET5tair10-symbols:AtVEX1
tair10-symbols:SWEET5TMHMM:TMhelixUniGene:At.55685UniProt:Q9FM10
Coordinates (TAIR10) chr5:-:25230204..25231527
Molecular Weight (calculated) 27211.30 Da
IEP (calculated) 8.87
GRAVY (calculated) 0.68
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDPHTARTI VGIVGNVISF GLFCAPIPTM VKIWKMKSVS EFKPDPYVAT VLNCMMWTFY GLPFVQPDSL LVITINGTGL FMELVYVTIF FVFATSPVRR
101: KITIAMVIEV IFMAVVIFCT MYFLHTTKQR SMLIGILCIV FNVIMYAAPL TVMKLVIKTK SVKYMPFFLS LANFMNGVVW VIYACLKFDP YILIPNGLGS
201: LSGIIQLIIY ITYYKTTNWN DDDEDKEKRY SNAGIELGQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)