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AT1G21540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22920973 (2012): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2); Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132; Bacteria - 50179; Metazoa - 3309; Fungi - 3660; Plants - 2281; Viruses - 1; Other Eukaryotes - 16067 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G21540-MONOMEREC:6.2.1.-eggNOG:COG0318eggNOG:KOG1176
EMBL:AC015447EMBL:AF503768EMBL:AY072217EMBL:AY133859
EMBL:CP002684EnsemblPlants:AT1G21540EnsemblPlants:AT1G21540.1entrez:838755
GeneID:838755Genevisible:Q9LPK6GO:GO:0006631GO:GO:0016874
Gramene:AT1G21540.1hmmpanther:PTHR24095hmmpanther:PTHR24095:SF122HOGENOM:HOG000230005
InParanoid:Q9LPK6InterPro:IPR000873InterPro:IPR018247InterPro:IPR020845
InterPro:IPR025110KEGG:ath:AT1G21540OMA:QANIIAHPaxDb:Q9LPK6
Pfam:PF00501Pfam:PF13193Pfam:Q9LPK6PhylomeDB:Q9LPK6
PIR:C86348PRIDE:Q9LPK6PRO:PR:Q9LPK6PROSITE:PS00018
PROSITE:PS00455ProteinModelPortal:Q9LPK6Proteomes:UP000006548RefSeq:NP_173573.1
scanprosite:PS00018scanprosite:PS00455SMR:Q9LPK6STRING:3702.AT1G21540.1
SUPFAM:SSF56801TAIR:AT1G21540UniGene:At.41650UniProt:Q9LPK6
Coordinates (TAIR10) chr1:-:7548758..7550521
Molecular Weight (calculated) 60637.70 Da
IEP (calculated) 6.98
GRAVY (calculated) -0.17
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MELLLPHPSN STPLTVLGFL DRAASVYGDC PSILHTTNTV HTWSETHNRC LRIASALTSS SLGINRGQVV SVVGPNVPSV YELQFAVPMS GAILNNINPR
101: LDAHALSVLL RHSESKLVFV DPNSISVVLE AVSFMRQNEK PHLVLLDDDQ EDGSLSPSAA SDFLDTYQGV MERGDSRFKW IRPQTEWQPM ILNYTSGTTS
201: SPKGVVLSHR AIFMLTVSSL LDWHFPNRPV YLWTLPMFHA NGWGYTWGTA AVGATNVCTR RVDAPTIYDL IDKHHVTHMC AAPMVLNMLT NYPSRKPLKN
301: PVQVMTAGAP PPAAIISRAE TLGFNVGHGY GLTETGGPVV SCAWKAEWDH LDPLERARLK SRQGVRTIGF AEVDVRDPRT GKSVEHDGVS VGEIVLKGGS
401: VMLGYYKDPE GTAACMREDG WFYSGDVGVI HEDGYLEVKD RSKDVIICGG ENISSAEVET VLYTNPVVKE AAVVAKPDKM WGETPCAFVS LKYDSNGNGL
501: VTEREIREFC KTRLPKYMVP RKVIFQEELP KTSTGKIQKF LLRQMAKSLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)