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AT2G46720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.799
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 13
Curator
Summary (TAIR10)
Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 13 (KCS13); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, very long-chain fatty acid metabolic process, cuticle development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: ovule, rosette leaf, fruit, cauline leaf, flower; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 14 (TAIR:AT3G10280.1); Has 3894 Blast hits to 3878 proteins in 958 species: Archae - 0; Bacteria - 1429; Metazoa - 0; Fungi - 9; Plants - 2321; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G46720-MONOMEREC:2.3.1.199eggNOG:COG3424eggNOG:ENOG410JWTH
EMBL:AC005819EMBL:AF188484EMBL:AF188485EMBL:CP002685
EnsemblPlants:AT2G46720EnsemblPlants:AT2G46720.1entrez:819284Gene3D:3.40.47.10
GeneID:819284Genevisible:Q9ZUZ0GO:GO:0006633GO:GO:0016021
GO:GO:0016747Gramene:AT2G46720.1gramene_pathway:2.3.1.-gramene_pathway:PWY-5080
hmmpanther:PTHR31561hmmpanther:PTHR31561:SF1HOGENOM:HOG000238893InParanoid:Q9ZUZ0
InterPro:IPR012392InterPro:IPR013601InterPro:IPR013747InterPro:IPR016039
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199KEGG:ath:AT2G46720KO:K15397
OMA:EKLRFIIPANTHER:PTHR31561PaxDb:Q9ZUZ0Pfam:PF08392
Pfam:PF08541Pfam:Q9ZUZ0PhylomeDB:Q9ZUZ0PIR:D84906
PIRSF:PIRSF036417PRIDE:Q9ZUZ0PRO:PR:Q9ZUZ0ProteinModelPortal:Q9ZUZ0
Proteomes:UP000006548RefSeq:NP_182195.1SMR:Q9ZUZ0STRING:3702.AT2G46720.1
SUPFAM:SSF53901TAIR:AT2G46720tair10-symbols:HICtair10-symbols:KCS13
TMHMM:TMhelixUniGene:At.36468UniGene:At.50165UniPathway:UPA00094
UniProt:Q9ZUZ0
Coordinates (TAIR10) chr2:+:19198821..19200221
Molecular Weight (calculated) 52178.60 Da
IEP (calculated) 9.26
GRAVY (calculated) 0.05
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MFIAMADFKI LLLILILISL FELDLLHFHH DFFSPFPVKI GLLLISIFFY AYSTTRSKPV YLVDFSCHQP TDSCKISSET FFNMAKGAQL YTDETIQFMT
101: RILNRSGLGD DTYSPRCMLT SPPTPSMYEA RHESELVIFG ALNSLFKKTG IEPREVGIFI VNCSLFNPNP SLSSMIVNRY KLKTDVKTYN LSGMGCSAGA
201: ISVDLATNLL KANPNTYAVI VSTENMTLSM YRGNDRSMLV PNCLFRVGGA AVMLSNRSQD RVRSKYELTH IVRTHKGSSD KHYTCAEQKE DSKGIVGVAL
301: SKELTVVAGD SLKTNLTALG PLVLPLSEKL RFILFLVKSK LFRLKVSPYV PDFKLCFKHF CIHAGGRALL DAVEKGLGLS EFDLEPSRMT LHRFGNTSSS
401: SLWYELAYVE AKCRVKRGDR VWQLAFGSGF KCNSIVWRAL RTIPANESLV GNPWGDSVHK YPVHVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)