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AT4G38650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family 10 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G38300.1); Has 2063 Blast hits to 2053 proteins in 438 species: Archae - 10; Bacteria - 1176; Metazoa - 20; Fungi - 357; Plants - 277; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G38650-MONOMERCAZy:CBM22CAZy:GH10eggNOG:COG3693
eggNOG:ENOG410IJCIEMBL:AK227537EMBL:BT004639EMBL:CP002687
EnsemblPlants:AT4G38650EnsemblPlants:AT4G38650.1entrez:830021Gene3D:2.60.120.260
Gene3D:3.20.20.80GeneID:830021GO:GO:0004553GO:GO:0005975
Gramene:AT4G38650.1hmmpanther:PTHR31490hmmpanther:PTHR31490:SF19HOGENOM:HOG000237473
InterPro:IPR001000InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853
KEGG:ath:AT4G38650OMA:CLTNQNFPfam:PF00331Pfscan:PS51760
PhylomeDB:Q84VX1PRINTS:PR00134PROSITE:PS51760Proteomes:UP000006548
RefSeq:NP_195577.2SMART:SM00633SMR:Q84VX1SUPFAM:SSF49785
SUPFAM:SSF51445TAIR:AT4G38650TMHMM:TMhelixUniGene:At.31160
unipathway:UPA00114UniProt:Q84VX1
Coordinates (TAIR10) chr4:+:18063377..18065769
Molecular Weight (calculated) 63473.20 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.28
Length 562 amino acids
Sequence (TAIR10)
(BLAST)
001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)