AT4G03010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNI-like superfamily protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G03440.1); Has 57010 Blast hits to 20810 proteins in 924 species: Archae - 22; Bacteria - 3353; Metazoa - 7717; Fungi - 414; Plants - 41880; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:1329952..1331139 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43509.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.46 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.14 | ||||||||||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFATLFSVL LLLLRFGLIV ESIIVPVDFL ALQAIRKSLD DLPGSNFFDS WDFTSDPCNF AGVYCDDDKV TALNLGDPRA GSPGLSGRID PAIGKLSALT 101: ELSIVPGRIM GSLPHTISQS KNLRFLAISR NFISGEIPAS LSELRGLKTL DLSYNQLTGS IPPSIGSLPE LSNLILCHNH LNGSIPQFLS QSLTRIDLKR 201: NNLTGIISLT SLPPSLQYLS LAWNQLTGPV YRVLLRLNQL NYLDLSLNRF TGAIPGQIFT FPITNLQLQR NFFYGVIQPP NQVTIPTVDL SYNRFSGELS 301: PLLSNVQNLY LNNNRFTGQV PVSFVDRLLA SNIQTLYLQH NFLTGIQISP AADIPVSSSL CLQYNCMVLP VQTPCPVKAG LQKTRPTTQC SEWRG |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)