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AT1G03440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G03010.1); Has 51202 Blast hits to 18238 proteins in 817 species: Archae - 16; Bacteria - 1653; Metazoa - 5878; Fungi - 321; Plants - 40223; Viruses - 0; Other Eukaryotes - 3111 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002684EnsemblPlants:AT1G03440
EnsemblPlants:AT1G03440.1entrez:839504Gene3D:3.80.10.10GeneID:839504
Gramene:AT1G03440.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF105InParanoid:F4I0W7
InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT1G03440
OMA:TRPTAQCPaxDb:F4I0W7Pfam:PF00560Pfam:PF08263
Pfam:PF13516PRIDE:F4I0W7ProteinModelPortal:F4I0W7Proteomes:UP000006548
RefSeq:NP_563685.2SMR:F4I0W7STRING:3702.AT1G03440.1SUPFAM:SSF52058
TAIR:AT1G03440UniGene:At.15581UniProt:F4I0W7
Coordinates (TAIR10) chr1:+:852681..853874
Molecular Weight (calculated) 43597.00 Da
IEP (calculated) 8.56
GRAVY (calculated) 0.16
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMRFTKLVW CLMFLLRFGF FTEAILDPVD FLALQAIRKS LDDLPGSKFF ESWDFTSDPC GFAGVYCNGD KVISLNLGDP RAGSPGLSGR IDPAIGKLSA
101: LTELSIVPGR IMGALPATIS QLKDLRFLAI SRNFISGEIP ASLGEVRGLR TLDLSYNQLT GTISPSIGSL PELSNLILCH NHLTGSIPPF LSQTLTRIDL
201: KRNSLTGSIS PASLPPSLQY LSLAWNQLTG SVYHVLLRLN QLNYLDLSLN RFTGTIPARV FAFPITNLQL QRNFFFGLIQ PANQVTISTV DLSYNRFSGG
301: ISPLLSSVEN LYLNSNRFTG EVPASFVERL LSANIQTLYL QHNFLTGIQI SPAAEIPVSS SLCLQYNCMV PPLQTPCPLK AGPQKTRPTT QCTEWRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)