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AT4G38420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SKU5 similar 9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKU5 similar 9 (sks9); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 10 (TAIR:AT4G28090.1); Has 5024 Blast hits to 4968 proteins in 899 species: Archae - 4; Bacteria - 1507; Metazoa - 261; Fungi - 1826; Plants - 1281; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G38420-MONOMEReggNOG:COG2132eggNOG:KOG1263EMBL:AY072215
EMBL:AY096593EMBL:CP002687EnsemblPlants:AT4G38420EnsemblPlants:AT4G38420.1
entrez:829999Gene3D:2.60.40.420GeneID:829999GO:GO:0005507
GO:GO:0009505GO:GO:0009506GO:GO:0016722Gramene:AT4G38420.1
gramene_pathway:1.10.3.3gramene_pathway:PWY-2261hmmpanther:PTHR11709hmmpanther:PTHR11709:SF64
HOGENOM:HOG000241637InterPro:IPR001117InterPro:IPR008972InterPro:IPR011706
InterPro:IPR011707KEGG:ath:AT4G38420OMA:VSSTIHYPfam:PF00394
Pfam:PF07731Pfam:PF07732PhylomeDB:Q8VYB3Proteomes:UP000006548
RefSeq:NP_195555.2SMR:Q8VYB3STRING:3702.AT4G38420.1SUPFAM:SSF49503
TAIR:AT4G38420tair10-symbols:sks9TMHMM:TMhelixUniGene:At.2768
UniProt:Q8VYB3
Coordinates (TAIR10) chr4:+:17982840..17985173
Molecular Weight (calculated) 62494.80 Da
IEP (calculated) 9.98
GRAVY (calculated) -0.35
Length 549 amino acids
Sequence (TAIR10)
(BLAST)
001: MCWWLNGAVW TMMMMTISII SFVQADDPYR FFDWRVTYGN ISPLGIPQRG ILINGQYPGP DIYSVTNDNL IINVHNDLDE PFLLSWNGVQ LRKNSYQDGV
101: YGTTCPIPPG KNYTYAIQVK DQIGSFFYFP SLAVHKAAGG FGGFRILSRP RIPVPFPEPA GDFTFLIGDW FKHDHKVLKA ILDRGHKLPL PQGVLINGQG
201: VSYMSSITVH KGKTYRFRIS NVGLQHTLNF RIQGHQMKLV EVEGTHTVQS MYTSLDIHVG QSYSVLVTMD QPDQDYDIVV STKFVAKKLL VSSTIHYSNS
301: RHSHSSSANS VHVQQPADEL DWSIKQARSI RTNLTASGPR PNPQGSYHYG RIKISRTLIL ESSAALVKRK QRYAINGVSF VPGDTPLKLA DYFKIKGVFK
401: MGSIPDKPRR GRGMRMETSV MGAHHRDFLE IIFQNREKIV QSYHLDGYSF WVVGTDRGTW SKASRREYNL RDAISRSTTQ VYPESWTAVY VALDNVGMWN
501: LRSEYWARQY LGQQFYLRVY SPTHSLRDEY LLPKNALLCG RASNKHTTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)