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AT1G22690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Gibberellin-regulated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT2G18420.1); Has 468 Blast hits to 468 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 468; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J20MeggNOG:ENOG41117E6EMBL:AC003979EMBL:AK118784
EMBL:CP002684EnsemblPlants:AT1G22690EnsemblPlants:AT1G22690.1EnsemblPlants:AT1G22690.2
EnsemblPlants:AT1G22690.3entrez:838875GeneID:838875Genevisible:Q8GWK5
GO:GO:0005576GO:GO:0009740Gramene:AT1G22690.1Gramene:AT1G22690.2
Gramene:AT1G22690.3hmmpanther:PTHR23201hmmpanther:PTHR23201:SF20HOGENOM:HOG000240234
InParanoid:Q8GWK5InterPro:IPR003854KEGG:ath:AT1G22690OMA:HRPRINC
PaxDb:Q8GWK5Pfam:PF02704Pfam:Q8GWK5PhylomeDB:Q8GWK5
PRIDE:Q8GWK5PRO:PR:Q8GWK5ProteinModelPortal:Q8GWK5Proteomes:UP000006548
RefSeq:NP_001185065.1RefSeq:NP_001185066.1RefSeq:NP_173683.1STRING:3702.AT1G22690.1
TAIR:AT1G22690TMHMM:TMhelixUniGene:At.41586UniProt:Q8GWK5
Coordinates (TAIR10) chr1:+:8027328..8027961
Molecular Weight (calculated) 12939.60 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.33
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKMNVVAFV TLIISFLLLS QVLAELSSSS NNETSSVSQT NDENQTAAFK RTYHHRPRIN CGHACARRCS KTSRKKVCHR ACGSCCAKCQ CVPPGTSGNT
101: ASCPCYASIR THGNKLKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)