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AT3G58100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 19223515
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 19223515
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plasmodesmata callose-binding protein 5
Curator
Summary (TAIR10)
Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.
Computational
Description (TAIR10)
plasmodesmata callose-binding protein 5 (PDCB5); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT1G29380.1); Has 1455 Blast hits to 1408 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 65; Plants - 1390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
CAZy:CBM43eggNOG:ENOG410IZ6NeggNOG:ENOG410YRJIEMBL:AL137081
EMBL:AY085999EMBL:BT025769EMBL:CP002686EnsemblPlants:AT3G58100
EnsemblPlants:AT3G58100.1entrez:824979GeneID:824979Genevisible:Q9M2K6
GO:GO:0001872GO:GO:0009506GO:GO:0030247GO:GO:0031225
GO:GO:0046658Gramene:AT3G58100.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF91
HOGENOM:HOG000005992InParanoid:Q9M2K6InterPro:IPR012946KEGG:ath:AT3G58100
OMA:TAIEWACPaxDb:Q9M2K6Pfam:PF07983Pfam:Q9M2K6
PhylomeDB:Q9M2K6PIR:T45970PRIDE:Q9M2K6PRO:PR:Q9M2K6
ProteinModelPortal:Q9M2K6Proteomes:UP000006548RefSeq:NP_567060.1SMART:SM00768
SMR:Q9M2K6STRING:3702.AT3G58100.1TAIR:AT3G58100tair10-symbols:PDCB5
TCDB:1.I.2.1.1TMHMM:TMhelixUniGene:At.34762UniProt:Q9M2K6
Coordinates (TAIR10) chr3:-:21515397..21516329
Molecular Weight (calculated) 19171.80 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.07
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MIMSLPQCSH LRLSILAATA AMLMVITTAQ IGGQVIQVEL WCVAKNNAED SSLQTAIEWA CGQGGADCGP IQQGGPCNDP TDVQKMASFV FNNYYLKNGE
101: EDEACNFNNN AALTSLNPSQ GTCKYPSSKG ANNGRLADDT SMGAGQADMS RGGRPISSSW MVTFIGFGSL LTMTWIIHHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)