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AT5G58580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25704231 (2015): Golgi trans-Golgi network
  • PMID:25704231 (2015): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TOXICOS EN LEVADURA 63
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TOXICOS EN LEVADURA 63 (ATL63); FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: TOXICOS EN LEVADURA 2 (TAIR:AT3G16720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21216eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AB020755
EMBL:CP002688EMBL:DQ056726EnsemblPlants:AT5G58580EnsemblPlants:AT5G58580.1
entrez:835972Gene3D:3.30.40.10GeneID:835972Genevisible:Q9LUZ9
GO:GO:0005768GO:GO:0005769GO:GO:0005798GO:GO:0005886
GO:GO:0008270GO:GO:0016021GO:GO:0016567GO:GO:0030100
GO:GO:0031625GO:GO:0071470GO:GO:1901000GO:GO:1903426
Gramene:AT5G58580.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF135HOGENOM:HOG000210047
InParanoid:Q9LUZ9InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G58580
OMA:LWEAGDFPaxDb:Q9LUZ9Pfam:PF13639Pfam:Q9LUZ9
Pfscan:PS50089PhylomeDB:Q9LUZ9PRIDE:Q9LUZ9PRO:PR:Q9LUZ9
PROSITE:PS50089ProteinModelPortal:Q9LUZ9Proteomes:UP000006548RefSeq:NP_200666.1
SMART:SM00184SMR:Q9LUZ9STRING:3702.AT5G58580.1SUPFAM:SSF57850
TAIR:AT5G58580tair10-symbols:ATL63tair10-symbols:TL63TMHMM:TMhelix
UniGene:At.64310UniPathway:UPA00143UniProt:Q9LUZ9
Coordinates (TAIR10) chr5:-:23676906..23677832
Molecular Weight (calculated) 34297.00 Da
IEP (calculated) 4.60
GRAVY (calculated) -0.42
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEEDGGSMS VKSSLSSFLK ILSSYNSNVL LAALVFLLLV VLFVLLLHFY ARFFWSPSHQ DFSAAARHRR RRRRNRRRTV TTTRIIPSLP LGGFDDGVSS
101: PAATATRDDK GLDSSVISSI PLFVYEENEE EEDEEEECVI CLGLWEAGDF GRKLRNCGHG FHVECIDMWL SSHSTCPLCR SPVLAAVSDE ENLKLAVNAV
201: EEEAEVRLQM SPAGENESNV SGDRRVSLSL SVMEDDLKTG DDDGEEEVRI EVFDDDEEIN DGGTRSDRRR SMSMTSSASS SLMRMLSSSS SRSERNKVFP
301: TARQDSSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)