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AT3G23840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HXXXD-type acyl-transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G13840.1); Has 1547 Blast hits to 1547 proteins in 88 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 7; Plants - 1538; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF4TeggNOG:ENOG410YCVDEMBL:AP001297EMBL:BT026480
EMBL:CP002686EnsemblPlants:AT3G23840EnsemblPlants:AT3G23840.1entrez:821967
Gene3D:3.30.559.10GeneID:821967Genevisible:Q9LIS1GO:GO:0009535
GO:GO:0009555GO:GO:0016747GO:GO:0042761GO:GO:0071555
Gramene:AT3G23840.1hmmpanther:PTHR31642hmmpanther:PTHR31642:SF22InParanoid:Q9LIS1
InterPro:IPR003480InterPro:IPR023213KEGG:ath:AT3G23840OMA:DMACYSF
PaxDb:Q9LIS1Pfam:PF02458Pfam:Q9LIS1PhylomeDB:Q9LIS1
PRIDE:Q9LIS1PRO:PR:Q9LIS1ProteinModelPortal:Q9LIS1Proteomes:UP000006548
RefSeq:NP_566741.1SMR:Q9LIS1STRING:3702.AT3G23840.1TAIR:AT3G23840
UniGene:At.37641UniGene:At.68116UniProt:Q9LIS1
Coordinates (TAIR10) chr3:+:8611177..8612559
Molecular Weight (calculated) 46431.70 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.01
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLVQEEGSG PVHGFRLSTV SASLPSETGT THEPTGLDLA MKLHYLKAVY IYSAGTARDL TVMDVKAPLF SVFYQIPCII GRFRRHESGR PYLKCNDCGT
101: RFVESHCDLT VEEWLRVPDR SVDESLVYHQ PVGPDLAFSP LLYIQMTRFS CGGLALGLSW AHIMGDPFSL SHFFNLWAQA FAGGKIYCPK TSVTERDFQN
201: PTSTFKKPDS VKQVDLVGDL WVAPNNSKMT TFSFNLTVND LKTHFPVNGD GEFEILTGII WKCVATVRGE SAPVTITVIR SDPKKLKPRA VRNGQMISSI
301: HVDFSVAEAS LEEIVKSIGE AKDERVVIDE IVDDVSDFIV YGANLTFVDM SEVDFYEAKV MGKSPESVYC NVQGIGDDGA VVVLPGVVEE ERVVTVTLPV
401: DEIEKVKWEM KKCGLITPLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)