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AT3G53920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNApolymerase sigma-subunit C
Curator
Summary (TAIR10)
Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids.
Computational
Description (TAIR10)
RNApolymerase sigma-subunit C (SIGC); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630), RNA polymerase sigma-70 factor (InterPro:IPR000943); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 22698 Blast hits to 22688 proteins in 2768 species: Archae - 0; Bacteria - 16386; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 4; Other Eukaryotes - 6035 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0568eggNOG:ENOG410IGEEEMBL:AB004822EMBL:AB019944
EMBL:AF015544EMBL:AL132960EMBL:AY128331EMBL:BT030362
EMBL:CP002686EMBL:D89994EnsemblPlants:AT3G53920EnsemblPlants:AT3G53920.1
entrez:824559Gene3D:1.10.10.10GeneID:824559Genevisible:O24621
GO:GO:0001053GO:GO:0003677GO:GO:0003700GO:GO:0003899
GO:GO:0006352GO:GO:0009507GO:GO:0016987GO:GO:0071482
GO:GO:2001141Gramene:AT3G53920.1hmmpanther:PTHR30603hmmpanther:PTHR30603:SF13
HOGENOM:HOG000005804InParanoid:O24621InterPro:IPR000943InterPro:IPR007624
InterPro:IPR007627InterPro:IPR007630InterPro:IPR011991InterPro:IPR013324
InterPro:IPR013325InterPro:IPR014284InterPro:IPR016262iPTMnet:O24621
KEGG:ath:AT3G53920KO:K03093OMA:FRMQLREPaxDb:O24621
Pfam:O24621Pfam:PF04539Pfam:PF04542Pfam:PF04545
PhylomeDB:O24621PIR:T45932PIRSF:PIRSF000767PRIDE:O24621
PRINTS:PR00046PRO:PR:O24621ProteinModelPortal:O24621Proteomes:UP000006548
RefSeq:NP_190960.1SMR:O24621STRING:3702.AT3G53920.1SUPFAM:SSF88659
SUPFAM:SSF88946TAIR:AT3G53920tair10-symbols:SIG3tair10-symbols:SIGC
TIGRfam:TIGR02937TIGRFAMs:TIGR02937UniGene:At.21270UniProt:O24621
Coordinates (TAIR10) chr3:-:19961041..19963820
Molecular Weight (calculated) 64909.30 Da
IEP (calculated) 10.39
GRAVY (calculated) -0.45
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)