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AT3G17470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ca2+-activated RelA/spot homolog
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ca2+-activated RelA/spot homolog (CRSH); FUNCTIONS IN: GTP diphosphokinase activity, calcium ion binding; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 14021 Blast hits to 13962 proteins in 3173 species: Archae - 6; Bacteria - 8120; Metazoa - 1259; Fungi - 992; Plants - 727; Viruses - 0; Other Eukaryotes - 2917 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G17470-MONOMEREC:2.7.6.5eggNOG:COG0317eggNOG:KOG1157
EMBL:AB022219EMBL:AK228656EMBL:BT006180EMBL:CP002686
EnsemblPlants:AT3G17470EnsemblPlants:AT3G17470.1entrez:821012Gene3D:1.10.238.10
GeneID:821012Genevisible:Q84R11GO:GO:0005509GO:GO:0005524
GO:GO:0005525GO:GO:0008728GO:GO:0008893GO:GO:0009507
GO:GO:0015969GO:GO:0016301GO:GO:0042594Gramene:AT3G17470.1
hmmpanther:PTHR21262hmmpanther:PTHR21262:SF12HOGENOM:HOG000241233InParanoid:Q84R11
InterPro:IPR002048InterPro:IPR003607InterPro:IPR007685InterPro:IPR011992
InterPro:IPR018247iPTMnet:Q84R11KEGG:ath:AT3G17470OMA:RYSMMKK
PaxDb:Q84R11Pfam:PF04607Pfam:PF13328Pfam:PF13499
Pfam:Q84R11Pfscan:PS50222PhylomeDB:Q84R11PRIDE:Q84R11
PRO:PR:Q84R11PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q84R11
Proteomes:UP000006548RefSeq:NP_188374.2scanprosite:PS00018SMART:SM00054
SMART:SM00954SMR:Q84R11STRING:3702.AT3G17470.1SUPFAM:SSF109604
SUPFAM:SSF47473SUPFAM:SSF81301TAIR:AT3G17470tair10-symbols:ATCRSH
tair10-symbols:CRSHUniGene:At.38719UniProt:Q84R11
Coordinates (TAIR10) chr3:+:5979868..5981968
Molecular Weight (calculated) 66582.10 Da
IEP (calculated) 6.38
GRAVY (calculated) -0.36
Length 583 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVIRPSPIP IPRCRSQVLH RRLYSIQLIQ RRRRRWNPRS EVEDTAIEST ARSPEAAGGK MVVELVGAFN EVTERMNSVW LSTSSSRLLF KALKLSIPIL
101: QSLPLASDGR SPLSKALSLS IILADLQMDA EVISASILSE VVDANAISIY EVRDHIGTGT AHLLHEIFRV KNIPFKVDVL DDETAASLRK FYLTYYDIRA
201: VIMDLVSKLD EMRHLDHLPR YRQQILSLEV LKIYSPLAHA VGANHLSLEL EDISFRYLFP CSYIYLDSWL RGHENGSKPL IDVYKEQLHR SLKDDLVLAE
301: MVNDVYIKGR YKSRYSMMKK LLRDGRKPEE VNDVLGLRVI LMPNSVVNDV EVGEKACYRT SEIIRSLWKE IPHRTKDYIA RPKENGYRSL HMAVDVSDSD
401: QIRPLMEIQI RTMDMDGSAN AGTASHSLYK GGLTDPKEAK RLKAIMLAAA DLAAIRLKDI SSNKHQSFKT TTNQRDRVFC LLDKNGDGMI SIEELMEVME
501: ELGAPGEDAE EMMQLLDSNS DGSLSSDEFD TFQKQVEFMR KWEDRDNEYK SLLDEKLHDL PHQDTTGLIQ LYNKELEDRL STH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)