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AT5G59750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II; FUNCTIONS IN: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase II (InterPro:IPR000926), DHBP synthase RibB (InterPro:IPR000422), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945); BEST Arabidopsis thaliana protein match is: GTP cyclohydrolase II (TAIR:AT5G64300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G59750-MONOMERBioCyc:ARA:GQT-1047-MONOMEREC:3.5.4.25EMBL:AB006705
EMBL:AF361835EMBL:AY050405EMBL:BT002730EMBL:CP002688
EnsemblPlants:AT5G59750EnsemblPlants:AT5G59750.1entrez:836096ExpressionAtlas:Q9FN89
Gene3D:3.90.870.10GeneID:836096Genevisible:Q9FN89GO:GO:0003935
GO:GO:0005525GO:GO:0008686GO:GO:0009231GO:GO:0009507
GO:GO:0046872gramene_pathway:3.5.4.25gramene_pathway:4.1.99.12gramene_pathway:RIBOSYN2-PWY
HAMAP:MF_00179HAMAP:MF_01283hmmpanther:PTHR21327hmmpanther:PTHR21327:SF7
HOGENOM:HOG000115440InterPro:IPR000422InterPro:IPR000926InterPro:IPR016299
InterPro:IPR017945InterPro:IPR032677KEGG:00740+3.5.4.25KEGG:00740+3.5.4.25+4.1.99.12
KEGG:00740+4.1.99.12Pfam:PF00925Pfam:PF00926Pfam:Q9FN89
PhylomeDB:Q9FN89PRIDE:Q9FN89PRO:PR:Q9FN89ProteinModelPortal:Q9FN89
Proteomes:UP000006548RefSeq:NP_568913.1SMR:Q9FN89SUPFAM:0052081
SUPFAM:SSF142695SUPFAM:SSF55821TAIR:AT5G59750TIGRfam:TIGR00505
TIGRfam:TIGR00506TIGRFAMs:TIGR00505TIGRFAMs:TIGR00506UniGene:At.70697
UniGene:At.7316UniPathway:UPA00275UniProt:Q9FN89
Coordinates (TAIR10) chr5:+:24073397..24075411
Molecular Weight (calculated) 56149.10 Da
IEP (calculated) 5.88
GRAVY (calculated) -0.28
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDSALYHPR IFFAHSFING LYSSPRFANT CWRLVSRSSW EIKASENSDR NVFDENPVRK TDGSLFDSAS FETVDAEITP ETDDFFVSDA EGDPDCPTQG
101: YSSIELALQA LRKGKFVIVV DDETGDVEGN LIMAATLTSP KDIAFLIKNG SGIVSVGMKK ENLERLSLTL MSPEMEDEDS SAPTFTITVD AKSGTSTGVS
201: ASDRAMTVLA LSSLDAKPDD FRRPGHVFPL KYRDGGVLRR AGHTEASVDL MILAGLRPLS VLSAILDQED GSMASLPYMK KLATEHDIPI VSLTDLIRYR
301: RKRDKLVERI TVSRLPTKWG LFQAYCYRSK LDGTENIALV KGNVGNGEDI LVRVHSECLT GDIFGSARCD CGNQLDLAME LIEKEGRGVV VYLRGHEGRG
401: IGLGHKLRAY NLQDEGHDTV QANVELGLSI DSREYGIGAQ MLRDIGVRTM RLMTNNPAKF TGLKGYGLAV VGRVPVVTPI TKENRRYMET KRKKMGHIYI
501: SDNNDQPLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)