AT2G23840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.734 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HNH endonuclease | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HNH endonuclease; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); Has 4176 Blast hits to 4176 proteins in 656 species: Archae - 6; Bacteria - 1679; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 29; Other Eukaryotes - 2425 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10153982..10155600 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32725.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.37 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||
| Length | 284 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAHFSARLKL LSSNDGLSFG VDSRDQFRQS LYMAGGGSPL VPIRMSRLKF CARIFSSYSF PYKRKKIRDL DNTEKNLDID EDNDEWDFDG DDDGLETDDH 101: LSCFRGLVLD ISYRPVNVVC WKRAICLEYM DKADVLEYYD QTVSSPTGSF YIPAVLRVPH LLQVVKRRRV KNSLSRKNIL LRDDYTCQYC SSRENLTIDH 201: VMPVSRGGEW TWQNLVAACS RCNSRKGQKT ADEAHMKLLK VPKEPKDYDI VAIPLTNAAI RMLRSNKGMP EEWRQYLAKP LSET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)