AT5G18760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G06330.1); Has 1350 Blast hits to 1348 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 526; Fungi - 109; Plants - 630; Viruses - 4; Other Eukaryotes - 81 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6258508..6260828 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45380.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.59 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||
| Length | 411 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMEGSSIQPP RNFVLAKDSS TGSSSSSSSS QVKEQSVEDV SRSQPSGSQL DVSIQIPPKP TPSLGILRNL SLKRKASLPN YERRLLLSPS VSETSEKPLV 101: ASPITSPYWK RCLSLPSSNS AKLSLVVSTT PVSAVVHSEQ PKSNKDGLHA SVSRSLSMNR VIVRAVSFDD NKNHISNEAN GDQITPVPAE ETEEEIPEEE 201: AVCRICLDVC EEGNTLKMEC SCKGDLRLVH EHCAIKWFST KGTRICDVCR QEVRNLPVIL LRVPTINQLT NRRELTQQSS EPQSISVGQE FVVLVLISTV 301: CYFFFLEHLL IRDLNSQAIF VAAPFSFTLA LLASTFAVIL AIREYIWTYA ALEFALVALL VHLLYATLRV PVIYAMLFAG ILGFGMAMCL NLLCICYSSR 401: PVRFPRNTNL V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)