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AT5G35560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DENN (AEX-3) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DENN (AEX-3) domain-containing protein; CONTAINS InterPro DOMAIN/s: uDENN (InterPro:IPR005113), dDENN (InterPro:IPR005112), DENN (InterPro:IPR001194); BEST Arabidopsis thaliana protein match is: DENN (AEX-3) domain-containing protein (TAIR:AT2G20320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II33eggNOG:ENOG410YREKEMBL:CP002688EnsemblPlants:AT5G35560
EnsemblPlants:AT5G35560.1entrez:833521GeneID:833521Gramene:AT5G35560.1
hmmpanther:PTHR15288hmmpanther:PTHR15288:SF4InParanoid:F4JZV9InterPro:IPR001194
InterPro:IPR005112InterPro:IPR005113KEGG:ath:AT5G35560OMA:MTTRRCY
PaxDb:F4JZV9Pfam:PF02141Pfam:PF03456Pfscan:PS50211
Pfscan:PS50946Pfscan:PS50947PRIDE:F4JZV9PROSITE:PS50211
PROSITE:PS50946PROSITE:PS50947ProteinModelPortal:F4JZV9Proteomes:UP000006548
RefSeq:NP_568527.2SMART:SM00799SMART:SM00800SMR:F4JZV9
TAIR:AT5G35560UniGene:At.24371UniProt:F4JZV9
Coordinates (TAIR10) chr5:-:13742458..13747464
Molecular Weight (calculated) 85119.10 Da
IEP (calculated) 5.36
GRAVY (calculated) -0.28
Length 765 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKNEEGSSS PSWGASFFMQ TSEDVAMAFA AAASAINPPR PSVVFSSKDE GSDSPLERLQ RQVSKAVKNF YETPKTKSVL YNPEVLTSQK RQWAKFQDHK
101: PLKDPSRLFE SVVVVGLHPN CDIQALERQY IARKSEGSSG RLRSALVSQN HSRVEPSLEP QVLLVYPPDK QPPIKYKDLH SFCFPGGIEV HAVERTPSMS
201: ELSEIILSQE HLRPSDLSFV FRLQVADNST LYGCCLLVEE IVNKPSRLLS TVLDKQPACS SLSRYVMTTR RCYCVLTRLP FFELHFGVLN SIFLEERLEH
301: LMSGISCASL EPPTDFSNED SLNDSSPQQR DSGDTKEQTV EAGSKLPKAD EISDNGTCEA NQKADDSAES IDRVTKADDS LPIIKQGRES CLPEPGPLLR
401: CPYLDEISDS STSFQAAPCE RRHSRTSADD TETDEASFSG QDDTSSNFDI LEWAKSKKNG SLQILCEYYQ LKCPARGSTI TFHPLEHLHP VEYHRPNEVA
501: LHTPGSAIDL RSCSTSLELA EAHTTLMAEE EAAALSTWAV ASLCGSLRLD NVLMILAGAL LEKQIVFVCS NLGILAASVL SIIPVIRPFR WQSLLMPVLP
601: DDMLEFLDAP VPYIVGVKNK TSEVQSKLTN VIVVDILKNQ VKSPSMPQLP QYRDLYNALS PYHSKLVGES YLAKKRPVYE CTDVQVDAAK GFMDVLRSYL
701: DSLCSNLQSH TITNVQSNND KVSLLLKESF IDSFPSRQRP FMKLFVDTQL FSVHTDLVLS FIQKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)