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AT3G01310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphoglycerate mutase-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, RimK-type (InterPro:IPR013651), Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT5G15070.1); Has 618 Blast hits to 482 proteins in 186 species: Archae - 0; Bacteria - 7; Metazoa - 225; Fungi - 193; Plants - 69; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNSNeggNOG:KOG1057EMBL:CP002686EnsemblPlants:AT3G01310
EnsemblPlants:AT3G01310.1entrez:821297ExpressionAtlas:F4J8C7Gene3D:3.40.50.1240
GeneID:821297GO:GO:0000828GO:GO:0000829GO:GO:0003993
GO:GO:0005886GO:GO:0009817GO:GO:0009861GO:GO:0016310
GO:GO:0032958Gramene:AT3G01310.1hmmpanther:PTHR12750hmmpanther:PTHR12750:SF12
InParanoid:F4J8C7InterPro:IPR000560InterPro:IPR029033InterPro:IPR033379
iPTMnet:F4J8C7ncoils:CoilOMA:ITVVIFEPaxDb:F4J8C7
Pfam:PF00328PhylomeDB:F4J8C7PRIDE:F4J8C7PROSITE:PS00616
ProteinModelPortal:F4J8C7Proteomes:UP000006548Reactome:R-ATH-1855167RefSeq:NP_186780.3
scanprosite:PS00616SMR:F4J8C7STRING:3702.AT3G01310.1SUPFAM:SSF53254
SUPFAM:SSF56059TAIR:AT3G01310UniGene:At.47813UniProt:F4J8C7
Coordinates (TAIR10) chr3:-:94343..101603
Molecular Weight (calculated) 119534.00 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.48
Length 1056 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEMEEGASGV GEKIKIGVCV MEKKVKCGSE VFSAPMGEIL DRLQSFGEFE ILHFGDKVIL EDPIESWPIC DCLIAFHSSG YPLEKAQAYA ALRKPFLVNE
0101: LDPQYLLHDR RKVYEHLEMY GIPVPRYACV NRKVPNQDLH YFVEEEDFVE VHGERFWKPF VEKPVNGDDH SIMIYYPSSA GGGMKELFRK IGNRSSEFHP
0201: DVRRVRREGS YIYEEFMATG GTDVKVYTVG PEYAHAEARK SPVVDGVVMR NTDGKEVRYP VLLTPAEKQM AREVCIAFRQ AVCGFDLLRS EGCSYVCDVN
0301: GWSFVKNSYK YYDDAACVLR KMCLDAKAPH LSSTLPPTLP WKVNEPVQSN EGLTRQGSGI IGTFGQSEEL RCVIAVVRHG DRTPKQKVKL KVTEEKLLNL
0401: MLKYNGGKPR AETKLKSAVQ LQDLLDATRM LVPRTRPGRE SDSDAEDLEH AEKLRQVKAV LEEGGHFSGI YRKVQLKPLK WVKIPKSDGD GEEERPVEAL
0501: MVLKYGGVLT HAGRKQAEEL GRYFRNNMYP GEGTGLLRLH STYRHDLKIY SSDEGRVQMS AAAFAKGLLD LEGQLTPILV SLVSKDSSML DGLDNASIEM
0601: EAAKARLNEI VTSGTKMIDD DQVSSEDFPW MTDGAGLPPN AHELLRELVK LTKNVTEQVR LLAMDEDENL TEPYDIIPPY DQAKALGKTN IDSDRIASGL
0701: PCGSEGFLLM FARWIKLARD LYNERKDRFD ITQIPDVYDS CKYDLLHNSH LDLKGLDELF KVAQLLADGV IPNEYGINPQ QKLKIGSKIA RRLMGKILID
0801: LRNTREEALS VAELKESQEQ VLSLSASQRE DRNSQPKLFI NSDELRRPGT GDKDEDDDKE TKYRLDPKYA NVKTPERHVR TRLYFTSESH IHSLMNVLRY
0901: CNLDESLLGE ESLICQNALE RLCKTKELDY MSYIVLRLFE NTEVSLEDPK RFRIELTFSR GADLSPLRNN DDEAETLLRE HTLPIMGPER LQEVGSCLSL
1001: ETMEKMVRPF AMPAEDFPPA STPVGFSGYF SKSAAVLERL VNLFHNYKNS SSNGRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)