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AT1G65580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Endonuclease/exonuclease/phosphatase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FRAGILE FIBER3 (FRA3); FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G43900.1); Has 2602 Blast hits to 2499 proteins in 289 species: Archae - 0; Bacteria - 180; Metazoa - 887; Fungi - 607; Plants - 609; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G65580-MONOMERBRENDA:3.1.3.36EC:3.1.3.36EC:3.1.3.86
eggNOG:COG5411eggNOG:KOG0565EMBL:AC001229EMBL:AJ005682
EMBL:AY761186EMBL:AY761190EMBL:BT004211EMBL:CP002684
EnsemblPlants:AT1G65580EnsemblPlants:AT1G65580.1entrez:842869Gene3D:2.130.10.10
Gene3D:3.60.10.10GeneID:842869Genevisible:Q84W55GO:GO:0004439
GO:GO:0046856GO:GO:0046872Gramene:AT1G65580.1hmmpanther:PTHR11200
hmmpanther:PTHR11200:SF137HOGENOM:HOG000242921InParanoid:Q84W55InterPro:IPR000300
InterPro:IPR001680InterPro:IPR005135InterPro:IPR015943iPTMnet:Q84W55
KEGG:ath:AT1G65580OMA:AWARKDLPaxDb:Q84W55Pfam:PF03372
Pfam:Q84W55PhylomeDB:Q84W55PIR:G96680PRIDE:Q84W55
PRO:PR:Q84W55PROSITE:PS00678ProteinModelPortal:Q84W55Proteomes:UP000006548
Reactome:R-ATH-1660499Reactome:R-ATH-1855183Reactome:R-ATH-1855204RefSeq:NP_176736.2
SMART:SM00128SMART:SM00320SMR:Q84W55STRING:3702.AT1G65580.1
SUPFAM:0049172SUPFAM:SSF56219TAIR:AT1G65580tair10-symbols:FRA3
UniGene:At.414UniProt:Q84W55
Coordinates (TAIR10) chr1:-:24377598..24383940
Molecular Weight (calculated) 121718.00 Da
IEP (calculated) 6.26
GRAVY (calculated) -0.34
Length 1101 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEDRQNDQND DVFSFFSPSF SAATPSTLFN RSAYSSSSSS GDDESQPSVD DSNKRIDYMI QFLDRRLSED GNHDGIGDGN GSDSLPEFVG KCGESGIFKV
0101: PIRSAVHPNR PPSLDVRPHP LRETQIGRFL RTMTSTERQL WTGGEDGALR VWEFSELYGS GRGLEVEDTA PYKESLGNEF GSAAVVCMIG DEGSRVVWSG
0201: HRDGRIRCWR LRGDHGIEEA LSWQAHRGPV LSIAISAYGD IWSGSEGGAL KVWPWDGALG KSLSLKMEER HMAALAVERS YIDPRNMVSA NGFANTLTSD
0301: VTFLVSDHTR ARVWSASPLT FAIWDARTRD LIKVFNIDGQ LENRPENSVY PDFGSEEEGK MKVTASKKEK AQSSLGFFQR SRNAIMGAAD AVRRAATKGG
0401: FCDDSRKTEA IVISVDGMIW TGSSNGILMR WDGNGNCLQE FAYESSGILC MFTFCSRLWV GYSNGTVQVW DLEGKLLGGW VAHSGPVIKM AIGAGYLFTL
0501: ANHGGIRGWN VTSPGPLDNV LRAELAGKEF LYSRIENLKI LAGTWNVGEG RASTDSLVSW LGCAATGVEI VVVGLQEVEM GAGVLAMSAA KETVGLEGSP
0601: LGQWWLDMIG KTLDEGSSFV RVGSRQLAGL LICVWVRHDL KPHVGDVDAA AVPCGFGRAI GNKGAVGVRL RMYDRVLCFV NCHFAAHLEA VNRRNADFDH
0701: VYRTMTFSRQ SSSLNAGVAG ASFGVTMPRG GNALGVNTIE ARPELSEADM VIFLGDFNYR LDDITYDETR DFISQRCFDW LREKDQLHTE MEAGNVFQGM
0801: REAIIRFPPT YKFERHQAGL AGYDSGEKKR IPAWCDRILY RDNKKHLGAE CSLDCPVVSS ISQYDACMEV TDSDHKPVRC VFSVKIARVD ESVRRQEYGN
0901: IINSNKKIKV LLGELSKVPE TIVSTNNIIL QNQDSTILRI TNKSEKNIAF FKIICEGQSK IEEDGQAHDH RARGSFGFPQ WLEVSPGTGT IKPNQIAEVS
1001: VHLEDFPTVE EFVDGVAQNS WCEDTRDKEV ILVLVVHGRF STETRKHRIR VRHCPRGGPA KNHFNDGTKT SGQINALHRS DYHQLSNTLD VVEQLKNLHS
1101: P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)