AT3G22380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : time for coffee | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nucleus-acting plant-specific clock regulator working close to the central oscillator and affecting the circadian gating of light responses. Circadian gating is the alteration of circadian phase according to the photoperiod of the entraining day/light cycle and the rhythmic antagonism of light responses in the early subjective night. TIC differentially regulates CCA1 and PRR9 from LHY, with LHY expression as a dominant genetic target of TIC action. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TIME FOR COFFEE (TIC); BEST Arabidopsis thaliana protein match is: TIC-like (TAIR:AT3G63180.1); Has 35078 Blast hits to 21616 proteins in 942 species: Archae - 10; Bacteria - 2414; Metazoa - 18018; Fungi - 6283; Plants - 1621; Viruses - 189; Other Eukaryotes - 6543 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7913181..7918879 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 164465.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||
| Length | 1550 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDRNREARRV PMAAAGNGLS RRRHRAGSFR DSPEEEGPVE LPEAARLRDR GGSNKKDRDR ERDRDRERER ERDRERDRLN SRSKRRRGER LMMVHGNLDD 0101: GGDDSSEESV NDDEEYDDGG VGPPSSLKML PPTSNNISAA SFSSSLSNHH NGGSGNLHHH HHSHNNNHQR KNNFPPTKVF RSSPSPAPVS PLVSTWKAAD 0201: EMIGVSVPRK ARSACTKRPH ESWASSTTGG GVFASGEQIH RQISSTSPAN RVSPASILAS PSPPAPTSPS SSSISVRKKL PSGTKQKPLP PKSSSSKLSS 0301: PVAVQDEIEI EIAEVLYGMM RMPSTSKQEA AGNDLTEAAK STVEVKSRVS SPISNPQTLP QSSITLAANS SSSNVSAIAP KRKKPRHVKY EDDNSSRVTT 0401: IKSEAEAPSK SQVPFSNQLK SSGSGEGNSS VLDSIIPLTR ESNASLDSEK KENNLSKDET ILPKVESSSG FRSDGEGAKS SSPEKEKFEI DLMAPPPVRS 0501: SSERGGEMME CVAAEAKPKV TEVETEAKPL LKEDRSDPAI HDSQEKKRPR MVAEAEHHKF ERNCELKLDL DKSDHVGLVN KHHVQKPPPQ QQLSVPDKTA 0601: QASHLPLHMS MPGWPGGLPT MGYMAPTQGV VPTDTSSLSA AAMQPPPHLL FNQPRPKRCA THCYIARNIQ SHQQFTKMNP FWPAAAGSAP MYGTKACNLS 0701: LMPPTELQGS VLGRSSNPVQ DKNSQSTSKS SETAQRNQLM LQQALPPGAA NSILHGPTFI FPLGQQPHAA ATIAAASVRP PNSGITSSGP TATSTSMNGS 0801: ASATPAGAPT MSFSYPAMPG NETQYLAILQ NNGYPFPVPA HVGAQPAYRG APGQPMPFFN GSFYSSQMIQ PPHHQPQKQH QQQLTGQMLQ SHAPNNQNGS 0901: ASTGSSAAQK HLQNQQLRPP INHGNSQGFP THKVQSQPLN FQQRQQPREN ATQHSETVGE DSPSTADSRG SRSNVAYGQN YGMQMQPTNL GLMSSPAPGG 1001: GVVGSSSSHG EKKSQQQVSK AGVESFQSPG YAMTFATFNG ANTAPTLNMS SIAQNHAMFH SMPEAARQGY QMMAAQAAQQ KMNYGASLED GKSGSIGGAA 1101: TANNTPEEQR KSGGGAIGKT SGGNGGQSIA FSNKQDLADA SVSAVTSGSI VDSSSRLLNL GSALPQSSGS LPTSHHQQLL QQQQQQHMQR SQSQQPYTTM 1201: YLQKQQRYAT SVAASAARTK GPVVSNGSGF PDHNMTTSPA GTTKFANANS GFPQNLVQSS SNQVQSQQWK NNSPRTTNTT QAQSPSMLSP STSVAAASSL 1301: RNIPHKQQSR PQQSQISFAA NSKPMTSGSP MQQVQGGTNH QAPSPPMLVG SPSTSSVSKN ASGSPRTTAS ASSAANKGGQ ASTTTHSASQ PSKNLQPASA 1401: ASSAGGRNNG PSVLGNPTTS SGSKSQQQQQ LPKHGLQPQA QLFFSNPYMQ AQHQHQQQQI TISPSGGYYI QRHQQQSGSA PAVPVTGAVT ATSDPAKAIA 1501: AASAANNMKG GGGMGKTQQH QLGPPGFTNV HAVSSAVQVK PVDQKQQAGE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)