AT1G24300.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : GYF domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GYF domain-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G27430.1); Has 5832 Blast hits to 4523 proteins in 447 species: Archae - 0; Bacteria - 473; Metazoa - 1947; Fungi - 549; Plants - 478; Viruses - 23; Other Eukaryotes - 2362 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:8614515..8620420 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 166280.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||
| Length | 1495 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAEGKFDLPD DLILSKSSDQ LKELASDNSI PLSPQWLYTK SSESKMDVRS PTPMPMGNPS DPNLKDAWRL DAPEDKKDWK KIVSENETNR RWREEERETG 0101: LLGARKVDRR KTERRIDNVS SRETGEVKTT AASDRWNDVN SRAAVHEPRR DNKWSSRWGP DDKEKEARCE KVEINKDKEE PQSESQSVVS NVRATSERDS 0201: DPRDKWRPRH RMESQSGVPT SYRTAPGFGL DRGRAEGPNL GFTVGRGRAS TIGRGSSTSL IGAGSASAPV FRYPRGKLLD MYRKQKPDPS LGRIPTEMDE 0301: VASITQVALI EPLAFIAPDT EEEASINGIW KGRIISSEVY TSSGEESLGE NSLLKCRIPE SGETKVDGAL LGFMNGDNGS MKNNDSGLLG SHNGGLGAAS 0401: SVPRLNSVAS ESYGSFGAGY QVSHGSPEAV RSVFTKSPVL DGSESVVGSF EQDYMGKLQQ PDVEVDQSEA AMPPEDFLFL YIDPQGVIQG PFIGSDIISW 0501: FEQGFFGTDL QVRLANAPEG TPFQDLGRVM SYLKTESAHA HISNQESELE ETRLKANSDT GLSIAPVAES NDSSSMNGTS RSFSVYNNPS AQDNFQRKSE 0601: SEFYATPPHT EDRSFLDFST QDEEIVFPGR AGVSGYASVK SSTSMHDAFM EVSGQSAIPV ESTKAATQKQ HENKLHPFGV LWSELESSNV PVNLLPNRSY 0701: DAMGEPTGAI DNRPIDSRRN TQVDPNMSLD GLASNRMSQF EHLSNRFNLG DQLSSNQHNQ QQFQNRDMLS HSHIGDQAQD LDYLITLQLQ QQQKIQLQQQ 0801: QKIQLQQQQK IQLQQQQKMQ LQQHQLEQEH QLHQKLLQEQ QQSHARQLHY QQILQGQTPD SRFGQSHDFP RSNNVDQMLL EHQLMNELQK SSGHPSQNFA 0901: PYIEQLAAGN FGQLPHEGHQ RELLEQLLST KMQSQYGPMQ SPYGQLQSEP TRSLEYQLLQ QEQLMQLANG VRHNTLLEEQ RHIDPLWPSD HNDQLLRSHP 1001: GIQRSRSSTG FRQLDFHQQQ QRPPFEDQFG QLERNLLYQQ QLRQELFEQG LPFERSASLP VSVSGMNLDP VNGLGLSQGL ELRDATTHMQ IGNSTLGFNH 1101: QNPRIPIGEP HFSQLESMEG RWSGADTQVV GDWAESQLHR SNIDAEHHKM RSESRRMGED SNSWMLGGTT EDRSKQLFME LLHQRPGHQS AESPSMNRGQ 1201: SFDRMAPSGL TPGIQTLGGY SDHGGSHNAP STFGARAFSD EQINRSSGDR NNMGSLHRNN SLLSGIIDGG RSTQNETQAF SNMYAMNKDA NDIKTWNNVP 1301: PKNEGMGRMM SFEAQDRMGK QAVLDSLVHG ELPVVTPGQQ SSLNISDQYS DNLVGEDRRK DRLVVPSHGQ NSVLLKRPPS SHSSSSHEGL IERISDTASR 1401: TAASSYSGIE GGVRRESGAA GNKGSTSEAT SFSEMLKKSN SMKKVAAESN DVTEGSKGGG GKKKGKKGRQ IDPALLGFKV TSNRIMGEIH RADDF |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)