AT3G01100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hypothetical protein 1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
unknown protein, has cDNAs and ESTs associated to it | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
hypothetical protein 1 (HYP1); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G69450.2); Has 1409 Blast hits to 1276 proteins in 193 species: Archae - 0; Bacteria - 2; Metazoa - 184; Fungi - 674; Plants - 429; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:35013..38176 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79730.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.85 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.34 | ||||||||||||||||||||||||||||||||
| Length | 703 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLSALLTSV GINLGLCFLF FTLYSILRKQ PSNVTVYGPR LVKKDGKSQQ SNEFNLERLL PTAGWVKRAL EPTNDEILSN LGLDALVFIR VFVFSIRVFS 101: FASVVGIFIL LPVNYMGTEF EEFFDLPKKS MDNFSISNVN DGSNKLWIHF CAIYIFTAVV CSLLYYEHKY ILTKRIAHLY SSKPQPQEFT VLVSGVPLVS 201: GNSISETVEN FFREYHSSSY LSHIVVHRTD KLKVLMNDAE KLYKKLTRVK SGSISRQKSR WGGFLGMFGN NVDVVDHYQK KLDKLEDDMR LKQSLLAGEE 301: VPAAFVSFRT RHGAAIATNI QQGIDPTQWL TEAAPEPEDV HWPFFTASFV RRWISNVVVL VAFVALLILY IVPVVLVQGL ANLHQLETWF PFLKGILNMK 401: IVSQVITGYL PSLIFQLFLL IVPPIMLLLS SMQGFISHSQ IEKSACIKLL IFTVWNSFFA NVLSGSALYR VNVFLEPKTI PRVLAAAVPA QASFFVSYVV 501: TSGWTGLSSE ILRLVPLLWS FITKLFGKED DKEFEVPSTP FCQEIPRILF FGLLGITYFF LSPLILPFLL VYYCLGYIIY RNQLLNVYAA KYETGGKFWP 601: IVHSYTIFSL VLMHIIAVGL FGLKELPVAS SLTIPLPVLT VLFSIYCQRR FLPNFKSYPT QCLVNKDKAD EREQNMSEFY SELVVAYRDP ALSASQDSRD 701: ISP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)