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AT3G56740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.638
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-associated (UBA) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-associated (UBA) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G41160.1); Has 305 Blast hits to 304 proteins in 119 species: Archae - 6; Bacteria - 5; Metazoa - 77; Fungi - 99; Plants - 90; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111CBKeggNOG:KOG4463EMBL:AK227952EMBL:AL390921
EMBL:AY085810EMBL:BT005215EMBL:CP002686EnsemblPlants:AT3G56740
EnsemblPlants:AT3G56740.1entrez:824841Gene3D:1.20.1540.10GeneID:824841
Genevisible:Q9LET3GO:GO:0004252GO:GO:0016021Gramene:AT3G56740.1
hmmpanther:PTHR12917hmmpanther:PTHR12917:SF20HOGENOM:HOG000237751InParanoid:Q9LET3
InterPro:IPR009060InterPro:IPR015940InterPro:IPR022764KEGG:ath:AT3G56740
OMA:RIWKLIMPaxDb:Q9LET3Pfam:PF00627Pfam:PF01694
Pfam:PF04511Pfscan:PS50030PhylomeDB:Q9LET3PIR:T51262
PRIDE:Q9LET3PRO:PR:Q9LET3PROSITE:PS50030ProteinModelPortal:Q9LET3
Proteomes:UP000006548RefSeq:NP_191233.1SMART:SM00165SMR:Q9LET3
STRING:3702.AT3G56740.1SUPFAM:SSF144091SUPFAM:SSF46934TAIR:AT3G56740
TMHMM:TMhelixUniGene:At.26610UniGene:At.48777UniProt:Q9LET3
Coordinates (TAIR10) chr3:+:21015631..21017883
Molecular Weight (calculated) 32379.30 Da
IEP (calculated) 10.41
GRAVY (calculated) 0.29
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGGPSGFHN APVTKAFVIT SALFTVFFGI QGRSSKLGLS YQDIFEKFRI WKLIMSTFAF SSTPELMFGL YLLYYFRVFE RQIGSNKYSV FILFSGTVSL
101: LLEVILLSLL KDTTANLLTS GPYGLIFASF IPFYLDIPVS TRFRVFGVNF SDKSFIYLAG VQLLLSSWKR SIFPGICGII AGSLYRLNIL GIRKAKFPEF
201: VASFFSRLSF PSFGNSPPPA PSRNIVGTIS PNTGRRAERS QPAPLPSSVE PSEEAITTLV SMGFDRNAAR QALVHARNDV NAATNILLEA QSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)