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AT2G36300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.861
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integral membrane Yip1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT3G52760.1); Has 658 Blast hits to 658 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 123; Plants - 111; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5080eggNOG:KOG3103EMBL:AC006921EMBL:AK175201
EMBL:BT025791EMBL:CP002685EnsemblPlants:AT2G36300EnsemblPlants:AT2G36300.1
entrez:818202GeneID:818202GO:GO:0016021Gramene:AT2G36300.1
hmmpanther:PTHR21236hmmpanther:PTHR21236:SF8InterPro:IPR006977KEGG:ath:AT2G36300
OMA:HFDHIWQPfam:PF04893PIR:A84779Proteomes:UP000006548
RefSeq:NP_565842.1STRING:3702.AT2G36300.1TAIR:AT2G36300TMHMM:TMhelix
UniGene:At.37568UniProt:Q9SJM8
Coordinates (TAIR10) chr2:-:15213362..15214129
Molecular Weight (calculated) 27096.00 Da
IEP (calculated) 7.41
GRAVY (calculated) 0.57
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKDFAVPPV VFPSGGSSGG ANVQQRRFPA TPFQPPRPSS SAIPFMSFDI GSAAASSATP AGPFGGTIAS SSSFGGGSAS FEDEEPLLDE LGIHPDQIWK
101: KTRSILNPFR INQAVHKDSD LSGPIFLYLA LCLFQLLAGK IQFGVILGWI VVSSIFLYVV FNMLAGRNGN LNLHTCTSLV GYCLLPVVVL SAVSLFVPQG
201: AGPVRFVLAA LFVLWSTRAC STLVVSLADG GEEHRGLIAY ACFLIYTLFS LLVIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)