suba logo
AT4G39220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rer1 family protein
Curator
Summary (TAIR10)
Key player of retrieval of ER membrane proteins
Computational
Description (TAIR10)
ATRER1A; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: endoplasmatic reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 516 Blast hits to 513 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 150; Plants - 130; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5249eggNOG:KOG1688EMBL:AB010945EMBL:AL050351
EMBL:AL161594EMBL:AY044321EMBL:AY086110EMBL:BT000929
EMBL:CP002687EnsemblPlants:AT4G39220EnsemblPlants:AT4G39220.1entrez:830077
GeneID:830077Genevisible:O48670GO:GO:0005794GO:GO:0006890
GO:GO:0016021Gramene:AT4G39220.1HOGENOM:HOG000163668InParanoid:O48670
InterPro:IPR004932KEGG:ath:AT4G39220OMA:HEAWRIYPaxDb:O48670
Pfam:O48670Pfam:PF03248PhylomeDB:O48670PIR:T08570
PIRSF:PIRSF016013PRIDE:O48670PRO:PR:O48670ProteinModelPortal:O48670
Proteomes:UP000006548RefSeq:NP_195633.1STRING:3702.AT4G39220.1TAIR:AT4G39220
tair10-symbols:ATRER1ATCDB:9.B.82.1.3TMHMM:TMhelixUniGene:At.472
UniProt:O48670
Coordinates (TAIR10) chr4:+:18264280..18265531
Molecular Weight (calculated) 21977.80 Da
IEP (calculated) 9.37
GRAVY (calculated) 0.18
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MDESGGDSGS VATPVQQRAH EAWRIYQHYL DKTTPHANYR WIGTLVVALI YCLRVYYIQG FYIIAYGLGI YLLNLLIGFL SPLVDPEAGG VSDGPSLPTR
101: GSDEFKPFIR RLPEFKFWYS MTKAFCIAFL MTFFSVFDVP VFWPILLCYW IVLFVLTMRR QIAHMIKYKY IPFSFGKQKY GGRSSSGSRA D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)