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AT2G21600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : endoplasmatic reticulum retrieval protein 1B
Curator
Summary (TAIR10)
Key player of retrieval of ER membrane proteins
Computational
Description (TAIR10)
endoplasmatic reticulum retrieval protein 1B (RER1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: Golgi apparatus, endoplasmic reticulum, cis-Golgi network; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: Rer1 family protein (TAIR:AT4G39220.1); Has 516 Blast hits to 512 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 152; Plants - 129; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
BioGrid:2051eggNOG:COG5249eggNOG:KOG1688EMBL:AB010946
EMBL:AC007119EMBL:AY057644EMBL:AY088719EMBL:AY113014
EMBL:CP002685EnsemblPlants:AT2G21600EnsemblPlants:AT2G21600.1entrez:816698
GeneID:816698Genevisible:O48671GO:GO:0005783GO:GO:0005794
GO:GO:0005801GO:GO:0006890GO:GO:0016021Gramene:AT2G21600.1
HOGENOM:HOG000163668InParanoid:O48671InterPro:IPR004932KEGG:ath:AT2G21600
MINT:MINT-8064161OMA:STNRWIGPaxDb:O48671Pfam:O48671
Pfam:PF03248PhylomeDB:O48671PIR:B84603PIR:T51628
PIRSF:PIRSF016013PRIDE:O48671PRO:PR:O48671ProteinModelPortal:O48671
Proteomes:UP000006548RefSeq:NP_179754.1STRING:3702.AT2G21600.1TAIR:AT2G21600
tair10-symbols:ATRER1Btair10-symbols:RER1BTMHMM:TMhelixUniGene:At.473
UniGene:At.72685UniProt:O48671
Coordinates (TAIR10) chr2:+:9243550..9244579
Molecular Weight (calculated) 22419.40 Da
IEP (calculated) 9.70
GRAVY (calculated) 0.16
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGSGGDSGS MATPVQKKVH EAWRVYQYYL DKTTPHSTNR WIGTLVFFLI YCLRVYSIHG FYIISYGLGI YLLNLLIGFL SPLVDPELEV SDGATLPTRG
101: SDEFKPFIRR LPEFKFWYSM TKAFCIAFLM TFFSVFDVPV FWPILLCYWV VLFVLTMRRQ IAHMIKHKYI PFSIGKQKYS GRKSSANSGG GSRAD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)