AT3G52760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.944 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Integral membrane Yip1 family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT2G36300.1); Has 535 Blast hits to 535 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 117; Plants - 63; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19553932..19554705 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27639.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.50 | ||||||||||||||||||||||||||||
| Length | 257 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKDFPIPPV VFPTSGSSPA TANVQQRRVP TAPYQPPRQS SASSSIPFIP FEIGSAAVSM PAGPFDGTIA SSASFGRGVS ASFEDEEPLL DELGIHPDQI 101: WKKTRSILNP FRINQTVHKD SDLSGPIFLY LALCLFQLLA GKIQFGVILG WVVVSSIFLY IVFNMLAGRN GNLNLHTCTS LVGYSLLPVV ILSAVSLFVP 201: QGAGPVRFVL GAAFVLWATR ACSNLVVSLA DGGEEHRGLI SYACFLIYTL FSLLVIF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)