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AT5G64090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZXRBeggNOG:KOG4688EMBL:AB008266EMBL:AK226676
EMBL:BT012356EMBL:CP002688EnsemblPlants:AT5G64090EnsemblPlants:AT5G64090.1
entrez:836530GeneID:836530GO:GO:0005886Gramene:AT5G64090.1
hmmpanther:PTHR31220hmmpanther:PTHR31220:SF2HOGENOM:HOG000240345InterPro:IPR018619
KEGG:ath:AT5G64090OMA:KLEFCKFPfam:PF09790PhylomeDB:Q9FMI8
Proteomes:UP000006548RefSeq:NP_201214.1TAIR:AT5G64090UniGene:At.28966
UniProt:Q9FMI8
Coordinates (TAIR10) chr5:+:25648069..25649415
Molecular Weight (calculated) 47727.90 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.23
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFSVKPSGG SPSPSSSTSS STPHRFKSVT TPTATAAAVS GFSPSAAADR DPMHSWWESV SKQRSRILSL SSLLSGDSHF EDGDVTPISS LADSDRPALS
101: LLSSRAAYSL ISNSLCNPAS GSGSDPLCQW LYETYLSSDP PLRLVVLSFF PLLVGMYLSR IHSSDSTSLP SLSGFEAVLL AIYAAEVKAR AGKPILVHIP
201: DLSQPSLYHT PRNGVDKSRD SNPTASVGVL SPQLEPQIAV KSTKRASIVG VGLQCYFKEI SQMPAWSKLE FCKFSASWAG QDCDCKEKID EDEDKVLALT
301: NGFGDSSSFN GSSGRSLEIE EDFDRLAIRE NEEQLSSNGG GGGVGRGVRI PLPWELFQPT LRILGHCLLS PLNTEDVKDA ASNAVRSLYA RASHDLNPQA
401: ILATRSLVNL DTSARTSGKT VAAETVNGSS NVNTPSKAKK PEILLASK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)