AT5G40190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.367 cytosol 0.321 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA ligase/cyclic nucleotide phosphodiesterase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Identified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNA ligase/cyclic nucleotide phosphodiesterase family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT3G28140.1); Has 227 Blast hits to 227 proteins in 109 species: Archae - 0; Bacteria - 185; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16069298..16069849 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20617.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.57 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||
| Length | 183 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEGYAIELY FDPALENQVL KAWNVFARRQ ISTKLINTES RPHITLFSTS FFDSTRLESV IKNFVSKQEP ISISFSTIGS FSSDNNVLFL SPTPSLSLLQ 101: LQTQLCDMLK KESVDIGEEY RVDSWVPFCP VALDVPKSRM AEAFSVLRDL KLPVNGYGME IGLVEFSPVR EVFSFPLGNT LES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)