AT5G38380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.339 golgi 0.270 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15345660..15348217 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40056.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.22 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.42 | ||||||||||||||||||||||||||||
| Length | 361 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMSPKQISDD RGSSHFRHTP FQIIHLIGNF FRIWSVYSMY RYLNQTGAPV VLFLFCCLVP SSIIFLIIQK PWKGRALSNQ QIVPSLINGV ITALYFILWG 101: KGLKSCGPLR AILSEYSGAV LGVLSGVLYG RRGHVWKKVG GLIAMLVALF FLSQGWATSS LSPFSTKDST ETKEEEVQTE QALGMMGMMI PVFAGILSAL 201: RRVIARRVSL KNQQKKRLHA ITITSATCFL FPVAMWDLII GSSSGKTSEL PFSAWAFLST IIFGIILIFY VDNIAEERLH MVFSSPRHLM VAGVCIIVME 301: LAYEMDFSLP GFIVCCLVLG FGIFEATSLE RNKKDSSLKS EDPSNGILGN NDFDTSPILP I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)