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AT1G56590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31023727 (2019): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Clathrin adaptor complexes medium subunit family protein
Curator
Summary (TAIR10)
Involved in vesicle trafficking between the trans -Golgi network and vacuoles.
Computational
Description (TAIR10)
ZIG SUPPRESSOR 4 (ZIP4); INVOLVED IN: intracellular protein transport, gravitropism, protein targeting to vacuole; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 1984 Blast hits to 1954 proteins in 323 species: Archae - 0; Bacteria - 0; Metazoa - 926; Fungi - 482; Plants - 226; Viruses - 0; Other Eukaryotes - 350 (source: NCBI BLink).
Protein Annotations
BioGrid:27338DNASU:842113eggNOG:ENOG410XT7BeggNOG:KOG2740
EMBL:AC009323EMBL:BT015502EMBL:BX814222EMBL:CP002684
EnsemblPlants:AT1G56590EnsemblPlants:AT1G56590.1entrez:842113GeneID:842113
Genevisible:F4I562GO:GO:0005794GO:GO:0006886GO:GO:0009630
GO:GO:0016192GO:GO:0030131GO:GO:0030659Gramene:AT1G56590.1
hmmpanther:PTHR10529HOGENOM:HOG000234366InterPro:IPR001392InterPro:IPR011012
InterPro:IPR018240InterPro:IPR028565KEGG:ath:AT1G56590KO:K12398
OMA:SGDVFMEPaxDb:F4I562Pfam:F4I562Pfam:PF00928
Pfscan:PS51072PIR:F96607PIRSF:PIRSF005992PRIDE:F4I562
PRINTS:PR00314PRO:PR:F4I562PROSITE:PS00990PROSITE:PS51072
ProteinModelPortal:F4I562Proteomes:UP000006548RefSeq:NP_176052.3scanprosite:PS00990
SMR:F4I562STRING:3702.AT1G56590.1SUPFAM:0038852SUPFAM:SSF49447
SUPFAM:SSF64356TAIR:AT1G56590tair10-symbols:ZIP4UniGene:At.42747
UniProt:F4I562
Coordinates (TAIR10) chr1:-:21202250..21204697
Molecular Weight (calculated) 46315.20 Da
IEP (calculated) 5.29
GRAVY (calculated) 0.01
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)