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AT4G24490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB geranylgeranyl transferase alpha subunit 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB geranylgeranyl transferase alpha subunit 1 (RGTA1); FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 2 (TAIR:AT5G41820.1); Has 3834 Blast hits to 3112 proteins in 396 species: Archae - 22; Bacteria - 493; Metazoa - 1923; Fungi - 431; Plants - 375; Viruses - 2; Other Eukaryotes - 588 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G24490-MONOMERBioCyc:ARA:GQT-1406-MONOMEReggNOG:COG5536eggNOG:KOG0529
EMBL:AY072209EMBL:AY117358EMBL:CP002687EnsemblPlants:AT4G24490
EnsemblPlants:AT4G24490.1EnsemblPlants:AT4G24490.2entrez:828551Gene3D:3.80.10.10
GeneID:828551GO:GO:0005829GO:GO:0005968GO:GO:0008318
GO:GO:0018344GO:GO:0046686Gramene:AT4G24490.1Gramene:AT4G24490.2
hmmpanther:PTHR11129hmmpanther:PTHR11129:SF2HOGENOM:HOG000030513InterPro:IPR001611
InterPro:IPR002088InterPro:IPR032675InterPro:IPR032955KEGG:ath:AT4G24490
KO:K14050OMA:NYRKLAFPANTHER:PTHR11129:SF2Pfam:PF01239
Pfam:PF13516Pfscan:PS51147Pfscan:PS51450PhylomeDB:Q8VYB7
PRO:PR:Q8VYB7PROSITE:PS51147PROSITE:PS51450Proteomes:UP000006548
RefSeq:NP_001078443.1RefSeq:NP_194180.2SMR:Q8VYB7STRING:3702.AT4G24490.1
SUPFAM:SSF48439SUPFAM:SSF52058TAIR:AT4G24490tair10-symbols:ATRGTA1
tair10-symbols:RGTA1UniGene:At.28080UniProt:Q8VYB7
Coordinates (TAIR10) chr4:-:12655330..12658103
Molecular Weight (calculated) 76912.60 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.35
Length 678 amino acids
Sequence (TAIR10)
(BLAST)
001: MHGRPRNASK PEEEAASAAK AVQLRSLQSQ FMTNHHDKIY TNEAIELSTK LLEINPEAYT AWNYRKLAVE DRLARIEPDP NLVSAILDEE LRVVESALRQ
101: NFKSYGAWHH RKWVLSKGHS SVGNELRLLE KFQKLDSRNF HAWNYRRFVV ELTNRSEQDE LQYTDDMINN NFSNYSAWHN RSVLLSSLLA QNADGFMPNI
201: KIPEEYDFVH SAIFTEPDDQ SGWFYHLWLL DQTLNVETPL LTSSWPSHGS SIILSGAGCL SGSSSMFTTF CSESGSFPLI LYFDQAVGGV SSSTVTIDSE
301: LKGNEGLVWE PIPNKNSQVS CVWVARLKYV SSDPCEYKVK IRVGNSPGIV SSRGYNFNAP YEFVFTAHVH DTVEDSQEGI VSWTDGFDIW DAKSKDLNSL
401: VTLDRLNAEM DFKWRQEAID SEVECFGILP DSKIGKLTLA RLLMAREAMV SDDAVKGVHY EEILQLYNDL MALDSSHYQY YKDEHSKAFL HKVTSSSESL
501: SRHLLRYRDM NNLVCLRLNN LSLSRIASVE KLLFVQMLDL SHNELHSTEG LEAMQLLSCL NLSHNRIRSF SALDSLRHVK QLKVLDVSHN HIGKHSVDTT
601: RYLCSSPLSN SELGQDDVGK QNPGLVTKYW DAYCVLTDLN LKQLDIAGNE IAGEEFSSFV LQVVPKLVWL DGQKKLGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)