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AT5G43670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Sec23/Sec24 protein transport family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5047eggNOG:KOG1986EMBL:BT003332EMBL:BT010350
EMBL:CP002688EnsemblPlants:AT5G43670EnsemblPlants:AT5G43670.1entrez:834387
Gene3D:3.40.20.10Gene3D:3.40.50.410GeneID:834387GO:GO:0006886
GO:GO:0006888GO:GO:0008270GO:GO:0030127Gramene:AT5G43670.1
hmmpanther:PTHR11141hmmpanther:PTHR11141:SF4HOGENOM:HOG000231690IntAct:Q84WI4
InterPro:IPR002035InterPro:IPR006895InterPro:IPR006896InterPro:IPR006900
InterPro:IPR007123InterPro:IPR012990InterPro:IPR029006KEGG:ath:AT5G43670
KO:K14006OMA:DLGFSECPfam:PF00626Pfam:PF04810
Pfam:PF04811Pfam:PF04815Pfam:PF08033PhylomeDB:Q84WI4
Proteomes:UP000006548Reactome:R-ATH-204005Reactome:R-ATH-5694530Reactome:R-ATH-983170
RefSeq:NP_568626.1SMR:Q84WI4STRING:3702.AT5G43670.1SUPFAM:SSF53300
SUPFAM:SSF81811SUPFAM:SSF81995SUPFAM:SSF82754SUPFAM:SSF82919
TAIR:AT5G43670UniGene:At.7193UniProt:Q84WI4
Coordinates (TAIR10) chr5:-:17539025..17541733
Molecular Weight (calculated) 88783.00 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.09
Length 794 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP
101: AELFPTYSAV EYSPLPSRQS GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM VEDELRAVRS DVLFVIEQLP
201: ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST
301: GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV
401: EMSGGFLLLG ETFESEQFKK CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY MWKTSTVTNK TCVSFFFHVS
501: NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS
601: SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ
701: WRKLEYHKDP SHETFRNLLE APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL QDFLEDLQSL AVKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)