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AT5G14950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : golgi alpha-mannosidase II
Curator
Summary (TAIR10)
Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.
Computational
Description (TAIR10)
golgi alpha-mannosidase II (GMII); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G66150.1); Has 2033 Blast hits to 1987 proteins in 497 species: Archae - 20; Bacteria - 870; Metazoa - 708; Fungi - 131; Plants - 147; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G14950-MONOMERBRENDA:3.2.1.114CAZy:GH38EC:3.2.1.114
eggNOG:ENOG410XQMZeggNOG:KOG1958EMBL:AF446883EMBL:AL391146
EMBL:AY052707EMBL:CP002688EMBL:DQ029214EnsemblPlants:AT5G14950
EnsemblPlants:AT5G14950.1entrez:831347Gene3D:1.20.1270.50Gene3D:2.60.40.1180
Gene3D:3.20.110.10GeneID:831347Genevisible:Q9LFR0GO:GO:0000139
GO:GO:0004559GO:GO:0004572GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0006013GO:GO:0006487GO:GO:0006491
GO:GO:0006517GO:GO:0008270GO:GO:0016021GO:GO:0030246
GO:GO:0042538Gramene:AT5G14950.1hmmpanther:PTHR11607hmmpanther:PTHR11607:SF4
HOGENOM:HOG000293253InterPro:IPR000602InterPro:IPR011013InterPro:IPR011330
InterPro:IPR011682InterPro:IPR013780InterPro:IPR015341InterPro:IPR027291
InterPro:IPR028995iPTMnet:Q9LFR0KEGG:ath:AT5G14950KO:K01231
OMA:ASLKDGWPaxDb:Q9LFR0Pfam:PF01074Pfam:PF07748
Pfam:PF09261Pfam:Q9LFR0PhylomeDB:Q9LFR0PIR:T51440
PRIDE:Q9LFR0PRO:PR:Q9LFR0ProteinModelPortal:Q9LFR0Proteomes:UP000006548
Reactome:R-ATH-975578RefSeq:NP_196999.1SMART:SM00872SMR:Q9LFR0
STRING:3702.AT5G14950.1SUPFAM:SSF74650SUPFAM:SSF88688SUPFAM:SSF88713
SwissPalm:Q9LFR0TAIR:AT5G14950tair10-symbols:ATGMIItair10-symbols:GMII
TMHMM:TMhelixUniGene:At.22883UniGene:At.68063UniPathway:UPA00378
UniProt:Q9LFR0
Coordinates (TAIR10) chr5:-:4837484..4841792
Molecular Weight (calculated) 134733.00 Da
IEP (calculated) 7.68
GRAVY (calculated) -0.51
Length 1173 amino acids
Sequence (TAIR10)
(BLAST)
0001: MPFSSYIGNS RRSSTGGGTG GWGQSLLPTA LSKSKLAINR KPRKRTLVVN FIFANFFVIA LTVSLLFFLL TLFHFGVPGP ISSRFLTSRS NRIVKPRKNI
0101: NRRPLNDSNS GAVVDITTKD LYDRIEFLDT DGGPWKQGWR VTYKDDEWEK EKLKIFVVPH SHNDPGWKLT VEEYYQRQSR HILDTIVETL SKDSRRKFIW
0201: EEMSYLERWW RDASPNKQEA LTKLVKDGQL EIVGGGWVMN DEANSHYFAI IEQIAEGNMW LNDTIGVIPK NSWAIDPFGY SSTMAYLLRR MGFENMLIQR
0301: THYELKKDLA QHKNLEYIWR QSWDAMETTD IFVHMMPFYS YDIPHTCGPE PAICCQFDFA RMRGFKYELC PWGKHPVETT LENVQERALK LLDQYRKKST
0401: LYRTNTLLIP LGDDFRYISI DEAEAQFRNY QMLFDHINSN PSLNAEAKFG TLEDYFRTVR EEADRVNYSR PGEVGSGQVV GFPSLSGDFF TYADRQQDYW
0501: SGYYVSRPFF KAVDRVLEHT LRGAEIMMSF LLGYCHRIQC EKFPTSFTYK LTAARRNLAL FQHHDGVTGT AKDYVVQDYG TRMHTSLQDL QIFMSKAIEV
0601: LLGIRHEKEK SDQSPSFFEA EQMRSKYDAR PVHKPIAARE GNSHTVILFN PSEQTREEVV TVVVNRAEIS VLDSNWTCVP SQISPEVQHD DTKLFTGRHR
0701: LYWKASIPAL GLRTYFIANG NVECEKATPS KLKYASEFDP FPCPPPYSCS KLDNDVTEIR NEHQTLVFDV KNGSLRKIVH RNGSETVVGE EIGMYSSPES
0801: GAYLFKPDGE AQPIVQPDGH VVTSEGLLVQ EVFSYPKTKW EKSPLSQKTR LYTGGNTLQD QVVEIEYHVE LLGNDFDDRE LIVRYKTDVD NKKVFYSDLN
0901: GFQMSRRETY DKIPLQGNYY PMPSLAFIQG SNGQRFSVHS RQSLGVASLK EGWLEIMLDR RLVRDDGRGL GQGVMDNRAM TVVFHLLAES NISQADPASN
1001: TNPRNPSLLS HLIGAHLNYP INTFIAKKPQ DISVRVPQYG SFAPLAKPLP CDLHIVNFKV PRPSKYSQQL EEDKPRFALI LNRRAWDSAY CHKGRQVNCT
1101: SMANEPVNFS DMFKDLAASK VKPTSLNLLQ EDMEILGYDD QELPRDSSQP REGRVSISPM EIRAYKLELR PHK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)