AT5G56020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Got1/Sft2-like vescicle transport protein family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305), Vesicle transport protein, SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT4G26550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22684586..22686206 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24868.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.04 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.44 | ||||||||||||||||||||||||||||
| Length | 230 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKMAKGWFP MSGTSSSGDQ QQQPLQTGGT SLLADWNSYA ASRDFEEDTG TLGFDIESAV RSANDTVSGT FNVVSKGVRD NLQSATSSMP SGKALMYFGL 101: LLASGVFFIF IAFTMFLPVM VLMPQKFAIC FTLGCGFIIG SFFALRGPQN QLAHMSSAER LPLTLGFIAT MVGTIYVSMV LHSYILSVIF SALQVIALAY 201: YCISYFPGGS SGMKFLSSTL TSSVFRMFGR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)