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AT5G09310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24723404 (2014): Golgi trans-Golgi network
  • PMID:24723404 (2014): plant-type vacuole
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:16068eggNOG:ENOG4111W09eggNOG:KOG3402EMBL:AK118667
EMBL:AL391712EMBL:AY088593EMBL:BT009650EMBL:CP002688
EnsemblPlants:AT5G09310EnsemblPlants:AT5G09310.1entrez:830790GeneID:830790
Genevisible:Q9FY84GO:GO:0005798GO:GO:0007219GO:GO:0016021
GO:GO:0070765Gramene:AT5G09310.1hmmpanther:PTHR16318HOGENOM:HOG000006264
InParanoid:Q9FY84InterPro:IPR019379KEGG:ath:AT5G09310KO:K06170
OMA:EASVDYAPaxDb:Q9FY84Pfam:PF10251Pfam:Q9FY84
PhylomeDB:Q9FY84PRIDE:Q9FY84PRO:PR:Q9FY84ProteinModelPortal:Q9FY84
Proteomes:UP000006548RefSeq:NP_196493.1SMR:Q9FY84STRING:3702.AT5G09310.1
TAIR:AT5G09310TMHMM:TMhelixUniGene:At.32532UniGene:At.69559
UniProt:Q9FY84
Coordinates (TAIR10) chr5:-:2887403..2888501
Molecular Weight (calculated) 16489.80 Da
IEP (calculated) 9.03
GRAVY (calculated) 0.04
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MEATRSDDPS LNPIRNRNPN PNPNPNPLST IISSAQVWPT IDGPLGLTEE ASVDYARRFY KFGFALLPWL WFVNCFYFWP VLRHSRAFPQ IRNYVVRSAI
101: GFSVFTALLS AWALTFSIGG EQLFGPLYDK LVMYNVADRL GLSGLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)