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AT5G05950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.852
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : maternal effect embryo arrest 60
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 60 (MEE60); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXK7eggNOG:ENOG410YKS5EMBL:AB017060EMBL:AK228786
EMBL:AY086454EMBL:BT025529EMBL:CP002688EnsemblPlants:AT5G05950
EnsemblPlants:AT5G05950.1entrez:830480GeneID:830480GO:GO:0009793
GO:GO:0016021Gramene:AT5G05950.1hmmpanther:PTHR33430hmmpanther:PTHR33430:SF2
HOGENOM:HOG000240599KEGG:ath:AT5G05950OMA:THPHYRLPhylomeDB:Q9FI91
Proteomes:UP000006548RefSeq:NP_196214.1TAIR:AT5G05950tair10-symbols:MEE60
TMHMM:TMhelixUniGene:At.32928UniProt:Q9FI91
Coordinates (TAIR10) chr5:+:1788814..1789341
Molecular Weight (calculated) 18742.20 Da
IEP (calculated) 8.33
GRAVY (calculated) 0.87
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTSIHITAL DGIVNVNSLF TLAVFIGLAW NPTDPDNSLV TDPNCVPTAR MAENLVAFHV YSFASFLFSS LIALGLKQAM RLNIASSFHI STRIDPVVYY
101: VNKTALRFGM VTSGLGSVCG CGFLMLALIN VVQIKLGTLG CGASGHTYAA VVPLVILVPS ALFIYVSLML YAFTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)