AT3G11530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vacuolar protein sorting 55 (VPS55) family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT1G32410.5); Has 298 Blast hits to 298 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 139; Plants - 84; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3628801..3629885 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 12472.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.86 | ||||||||||||||||||||||||
| Length | 113 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSSSILLQI LACAIYGNWW PMLSALMYVV VPMPCMFFGG GSTQFLISRD GGGWIDAAKF LTGASTVGSL AIPIILRHAQ MIETGAMLIE FTSFFIFICT 101: VMCFHRASLD DDW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)