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AT2G28370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.527
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G37200.1); Has 210 Blast hits to 210 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 210; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWFIeggNOG:ENOG4111IKSEMBL:AC006283EMBL:AF375441
EMBL:AY085240EMBL:AY143955EMBL:CP002685EnsemblPlants:AT2G28370
EnsemblPlants:AT2G28370.1entrez:817385GeneID:817385Genevisible:Q9SKN3
GO:GO:0005886GO:GO:0016021Gramene:AT2G28370.1hmmpanther:PTHR32021
hmmpanther:PTHR32021:SF1HOGENOM:HOG000243377InParanoid:Q9SKN3InterPro:IPR006702
KEGG:ath:AT2G28370OMA:DLNSCAQPaxDb:Q9SKN3Pfam:PF04535
Pfam:Q9SKN3PhylomeDB:Q9SKN3PIR:A84684PRO:PR:Q9SKN3
Proteomes:UP000006548RefSeq:NP_565671.1STRING:3702.AT2G28370.1TAIR:AT2G28370
TMHMM:TMhelixUniGene:At.43780UniProt:Q9SKN3
Coordinates (TAIR10) chr2:+:12132092..12133447
Molecular Weight (calculated) 19225.20 Da
IEP (calculated) 4.73
GRAVY (calculated) 0.59
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MNVSHASVHP VEDPPAAATE VENPPRVRMD DMEGMPGTLL GLALRFFQFL FAAAALCVMA STSDFPSVTA FCYLVAATGL QSLWSLALAM VDVYAIMVKR
101: SLQNRRLVSL FAIGDGVTST LTFAAACASA GITVLIDNDL NSCAQNHCVQ FETSTALAFI SWFAALPSFL FNFWSLASR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)