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AT2G41900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCCH-type zinc finger protein with ARM repeat domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCCH-type zinc finger protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger protein with ARM repeat domain (TAIR:AT5G12850.1); Has 5399 Blast hits to 3519 proteins in 384 species: Archae - 10; Bacteria - 312; Metazoa - 2497; Fungi - 280; Plants - 489; Viruses - 8; Other Eukaryotes - 1803 (source: NCBI BLink).
Protein Annotations
BioGrid:4127eggNOG:ENOG410ITVHeggNOG:ENOG410Y7ICEMBL:AY037232
EMBL:AY093957EMBL:CP002685EMBL:U90439EnsemblPlants:AT2G41900
EnsemblPlants:AT2G41900.1entrez:818790Gene3D:1.25.40.20GeneID:818790
Genevisible:P93755GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0005737GO:GO:0006355GO:GO:0046872Gramene:AT2G41900.1
hmmpanther:PTHR14493hmmpanther:PTHR14493:SF43HOGENOM:HOG000240339InParanoid:P93755
IntAct:P93755InterPro:IPR000571InterPro:IPR002110InterPro:IPR020683
iPTMnet:P93755KEGG:ath:AT2G41900OMA:WAVNSEEPaxDb:P93755
Pfam:P93755Pfam:PF00642Pfam:PF12796Pfscan:PS50088
Pfscan:PS50103Pfscan:PS50297PhylomeDB:P93755PIR:E84847
PRIDE:P93755PRINTS:PR01415PRO:PR:P93755PROSITE:PS50088
PROSITE:PS50103PROSITE:PS50297ProteinModelPortal:P93755Proteomes:UP000006548
RefSeq:NP_565962.1SMART:SM00248SMART:SM00356SMR:P93755
STRING:3702.AT2G41900.1SUPFAM:SSF48403TAIR:AT2G41900UniGene:At.23950
UniProt:P93755
Coordinates (TAIR10) chr2:+:17491352..17493502
Molecular Weight (calculated) 77996.30 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.50
Length 716 amino acids
Sequence (TAIR10)
(BLAST)
001: MCCGSDRLNQ IVSSRSSLPI SFEEDNNLVT NTDMNHLTVE TEDTFASLLE LAANNDVEGV RLSIERDPSC VDEAGLWYGR QKGSKAMVND YRTPLMVAAT
101: YGSIDVIKLI VSLTDADVNR ACGNDQTTAL HCAASGGAVN AIQVVKLLLA AGADLNLLDA EGQRAGDVIV VPPKLEGVKL MLQELLSADG SSTAERNLRV
201: VTNVPNRSSS PCHSPTGENG GSGSGSPLGS PFKLKSTEFK KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF
301: HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSGVSVMS
401: PLSPSAAGNG MSHSNMAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPTD EFNMLADYEQ QQLLNEYSNA LSRSGRMKSM PPSNLEDLFS AEGSSSPRFT
501: DSALASAVFS PTHKSAVFNQ FQQQQQQQQS MLSPINTSFS SPKSVDHSLF SGGGRMSPRN VVEPISPMSA RVSMLAQCVK QQQQQQQQQQ QQHQFRSLSS
601: RELRTNSSPI VGSPVNNNTW SSKWGSSNGQ PDWGMSSEAL GKLRSSSSFD GDEPDVSWVQ SLVKETPAEA KEKAATSSSG EHVMKQPNPV EPVMDHAGLE
701: AWIEQMQLDQ LVAQQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)