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AT5G61960.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MEI2-like protein 1
Curator
Summary (TAIR10)
A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.
Computational
Description (TAIR10)
MEI2-like protein 1 (ML1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: MEI2-like 4 (TAIR:AT5G07290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21561eggNOG:ENOG4111R9FeggNOG:KOG4660EMBL:AB022212
EMBL:AK316683EMBL:AY062536EMBL:BT008806EMBL:CP002688
EMBL:D86122EnsemblPlants:AT5G61960EnsemblPlants:AT5G61960.1EnsemblPlants:AT5G61960.2
entrez:836317Gene3D:3.30.70.330GeneID:836317Genevisible:Q8W4I9
GO:GO:0000166GO:GO:0003723GO:GO:0006351GO:GO:0006355
GO:GO:0051321Gramene:AT5G61960.1Gramene:AT5G61960.2hmmpanther:PTHR24012
hmmpanther:PTHR24012:SF390HOGENOM:HOG000030212InParanoid:Q8W4I9IntAct:Q8W4I9
InterPro:IPR000504InterPro:IPR007201InterPro:IPR012677iPTMnet:Q8W4I9
KEGG:ath:AT5G61960OMA:CAANDTEPaxDb:Q8W4I9Pfam:PF00076
Pfam:PF04059Pfam:Q8W4I9Pfscan:PS50102PhylomeDB:Q8W4I9
PRIDE:Q8W4I9PRO:PR:Q8W4I9PROSITE:PS50102ProteinModelPortal:Q8W4I9
Proteomes:UP000006548RefSeq:NP_001032122.1RefSeq:NP_568946.1SMART:SM00360
SMR:Q8W4I9STRING:3702.AT5G61960.1SUPFAM:SSF54928TAIR:AT5G61960
tair10-symbols:AML1tair10-symbols:ML1UniGene:At.340UniProt:Q8W4I9
Coordinates (TAIR10) chr5:-:24879001..24883483
Molecular Weight (calculated) 100794.00 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.63
Length 915 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)