suba logo
AT3G58580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.971
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G58560.1); Has 1306 Blast hits to 1271 proteins in 209 species: Archae - 0; Bacteria - 7; Metazoa - 532; Fungi - 229; Plants - 279; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G58580-MONOMEREC:3.1.13.4eggNOG:COG5239eggNOG:KOG0620
EMBL:AK226830EMBL:AL137082EMBL:CP002686EnsemblPlants:AT3G58580
EnsemblPlants:AT3G58580.1entrez:825027Gene3D:3.60.10.10GeneID:825027
Genevisible:Q9M2F8GO:GO:0003723GO:GO:0004535GO:GO:0005634
GO:GO:0005737GO:GO:0006351GO:GO:0006355GO:GO:0046872
Gramene:AT3G58580.1hmmpanther:PTHR12121hmmpanther:PTHR12121:SF34HOGENOM:HOG000239764
InParanoid:Q9M2F8InterPro:IPR005135KEGG:ath:AT3G58580KO:K12603
OMA:GFKACIDPaxDb:Q9M2F8Pfam:PF03372Pfam:Q9M2F8
PhylomeDB:Q9M2F8PIR:T45678PRIDE:Q9M2F8PRO:PR:Q9M2F8
ProteinModelPortal:Q9M2F8Proteomes:UP000006548RefSeq:NP_191417.2SMR:Q9M2F8
STRING:3702.AT3G58580.1SUPFAM:SSF56219TAIR:AT3G58580UniGene:At.34714
UniProt:Q9M2F8
Coordinates (TAIR10) chr3:-:21660866..21663697
Molecular Weight (calculated) 67056.80 Da
IEP (calculated) 7.57
GRAVY (calculated) -0.32
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KNSTTDDVPE SAPLEGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRSLVPKS YHCSPKCFTD
101: AWQHHRTLHE RAAAENNANE DDDLNRNNSA GSGSLAGSLS GSMSNLSIAN NGPAPFYPSN ITQKNGGETL VEVGGCKTYT PTADDISHVL KFECVVANAE
201: TKQIVGHPST ILTSRVIPAP SPSPRKLIPV NGADGMGHLD QDARIQSAGS FTVLSYNILS DTSASSDLYS YCPPWALSWP YRRQNLLREI VGYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAI DGCATFFRRD RFSHVKKYDV EFNKAAQSLT DALIPQAQKR TALNRLVKDN IALIVVLEAK
401: FGNQPTDPSG KRQLICVANT HVNVQQDLKD VKLWQVHTLL KGLEKIAASA DIPMLVCGDF NTLPGSAPHT LLVMGKVDPM HPDLAVDPLN ILRPHTKLTH
501: QLPLVSAYSS FVRKGIMGLG LEQHRRRIDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSNHIAL LAEFRCTPRT
601: RRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)