AT5G35430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.816 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 227 Blast hits to 213 proteins in 75 species: Archae - 0; Bacteria - 6; Metazoa - 158; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:13662077..13665735 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86742.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.70 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||
| Length | 786 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSRDSLSSD AVRDASSLSD DAAVLSVTST LAKTALSYFQ SGKFEECIDV LIQLDQMKHN DPKVLHNMAI AEYFKDGCSN SEKLVEVLKR VKKQSEQLSS 101: AAKDQVEAAN PGTNVSVSKD HFDRTVTTLN IAVTWFHLYH YSKSFSILEP LFQNIQRLDE TIALQICFLL LDISLACRDA VNFLAVFDYM DKAFGVGFGS 201: HEENGSTMQL SSNQVSRTSS LLSSSVASDT LRSDLTAAES SLCEETLDYE NVLAEIEAEK RMKLVGHIPA NNLLKTLSER SFSTADLKLE LQLYKVRFLL 301: LTRNLKLAKR EVKHAMNIAQ KRDSSMALLL KSQLEYAHGN HPKAMKLLLV SGIHKEAGTS GIFNNNLGCI FYQLGCYQAS SVLFLKALRS CSSLRNGKPA 401: KTFSLSQNKS MLITYNCGLL YLASGKPLLA AQCFQKASHV FRRQPLIWLR LAECCMMALQ KGLLEGGNSS LDRSEIRVHV IGKGNRRQLM IEENGYVELA 501: GSNQLSKLSL PLARVCLSNG IYLLNESLSN DSKSDLGSIL SVGMNETKEG SSSDHEEGNT NTDSKEAKGG MSQEIIQNSL SAFEDIRNRE KQLMRQALFA 601: NMAYVELELA NPIKALSAAT SLLQLADCSK IYVFLGHIYA AEALCLLNRP IEAGAHLSAY LLGQDDFKLP YAQEDFDQWW KHTSSDCEET LDPSTGNTRD 701: SVFLKPEEAR GALFADLAAL LATQGHHDQA KSLITHALTL LPNNVQATVT AVYIDLMLGR SQDALARLKQ CTHVSFVPGR LEVRAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)